Planktomarina temperata: RCA23_c30710
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Entry
RCA23_c30710 CDS
T03229
Name
(GenBank) hypothetical protein
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ptp
Planktomarina temperata
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptp03009
]
RCA23_c30710
Enzymes [BR:
ptp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RCA23_c30710
Ribosome biogenesis [BR:
ptp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RCA23_c30710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
MTS
PDGF
Motif
Other DBs
NCBI-ProteinID:
AII88571
UniProt:
A0AAN0VJY9
LinkDB
All DBs
Position
3248505..3249719
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AA seq
404 aa
AA seq
DB search
MELTIERLGHLGDGLAAGPIFVDRALPGEVFSGDLLGDRLQNTRIVTPSKHRITPLCSAF
KRCGGCALHHAHPDFVAQWKQEVVVRALAAQGITAEIQALHTSPENSRRRAKLTGRRTKK
GATVGFFGKASDTIQPIEPCKVLVPEIMRIIPALEQFTVQFGSRKGQLGFWVLATDRGID
VSVEGLDHLADTDFGPFAQWAGSNGIARLSVGNEIICQHQAPQMTFGRVKVSPPPRAFTQ
ATSAGERALQAAVARALAGADRVVDLFSGAGTLGLPLADRATLHCFENDAGLLEALAHGV
RHTQGIKSVTTSTRDLFRNPVDHTDLKPFNAAIIDPPRAGAEQQVGQLAQSDLRDIAMVS
CNPVSFARDAALLCNGGYLLKWIEVVDQFRWSPHIEIVAHFSKV
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggaactcacaatcgaacgtttagggcacctgggcgatggtttggccgcggggccaatt
tttgttgatcgcgccctgcctggagaggtgttctctggggatttgctgggcgatcggttg
caaaatacacgaattgtcacgccctccaagcatcgtatcacccctctgtgcagcgcattt
aagcgctgtgggggctgcgcgttacatcatgcacatcctgattttgtggctcagtggaaa
caagaggttgtggtgcgggccttggcggcgcagggaatcacagctgaaattcaagcgctt
cacacatcgccagaaaattcccgtcgccgcgccaaactcacaggccgacgcacaaagaag
ggtgcaacggtgggtttctttggcaaggccagcgacacaattcagccgattgagccctgc
aaggttctggtgcctgagatcatgcgtatcataccggcgcttgaacaattcacggtccaa
tttggatctcgcaaggggcagctgggcttttgggtcctggcaacagatcgggggattgat
gtctctgttgagggattggatcatctcgcagatacagattttggcccatttgcccaatgg
gctggatccaatggaattgcgcggctgtccgtgggaaatgaaatcatttgccagcatcag
gcgccgcaaatgacctttggcagggtaaaagtctctccgccacccagggcattcacccaa
gccacctctgcgggcgagcgcgcgctccaagcggcggtggcgcgtgcattggcgggagcg
gatcgggtggttgatttgttctctggcgctggcacattgggattgccgctggcggatagg
gcgacgctgcattgttttgagaacgatgccggtttgcttgaggctttggcccatggcgtg
cgtcacacgcaggggatcaagagtgtcacaacctccacccgtgatttgtttcgcaatcct
gttgaccatacggacttgaaaccgttcaacgccgccatcatcgacccacctcgcgccggc
gcagagcagcaagtggggcaattggcgcaaagcgatttgcgcgatattgctatggtgtca
tgcaatcctgtcagtttcgcgcgtgatgcggccttgctttgtaacggcggttatttgcta
aaatggattgaagtggttgatcaatttagatggtcgccgcatatcgagatcgttgcccat
ttcagcaaggtttaa
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