Puccinia triticina (wheat leaf rust): PtA15_10A301
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Entry
PtA15_10A301 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03013
Nucleocytoplasmic transport
ptrc03015
mRNA surveillance pathway
ptrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PtA15_10A301
09122 Translation
03013 Nucleocytoplasmic transport
PtA15_10A301
03015 mRNA surveillance pathway
PtA15_10A301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_10A301
03041 Spliceosome [BR:
ptrc03041
]
PtA15_10A301
Enzymes [BR:
ptrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PtA15_10A301
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PtA15_10A301
Spliceosome [BR:
ptrc03041
]
Complex C
Other components
EJC/TREX
PtA15_10A301
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PtA15_10A301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
CMS1
DUF6329
Motif
Other DBs
NCBI-GeneID:
77801359
NCBI-ProteinID:
XP_053024435
LinkDB
All DBs
Position
10A:complement(join(3071651..3071666,3071765..3071825,3071897..3072307,3072383..3072462,3072528..3072559,3072623..3072645,3072728..3072755))
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AA seq
216 aa
AA seq
DB search
MAEHAEDLIDYDEDDAGDQKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPSEVQQECI
PQAILGMDVLCQAKSGMGKTAVFVTATLQQMDPKDGEVSMLVLCHTRELAYQIKNEYARF
SKYMPDIRTAVVYGGISIKQDAEMLKAKDKCPHILVGTPGRLNALVRDGLLKCNTVRTFV
LDECDKMLESVDMRRDVQQVFLATPHAKQVMIHIPG
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacacgctgaagatctcattgactacgacgaggacgacgccggcgaccagaag
ggctcctacgtcggcatccactccaccggcttccgcgacttcctcttgaagcccgagctg
ctgcgagccatcagcgacctcggcttcgaacatccctccgaagtccaacaggaatgcatc
ccccaggccatcctgggcatggatgtgctctgccaggccaagtcgggcatgggcaagacc
gccgtcttcgtcaccgccaccctgcagcagatggaccccaaggacggcgaggtgtcgatg
ctcgtgctctgccacacccgcgagctggcctaccagatcaagaacgagtatgcccgcttc
agcaagtacatgcccgacatccgcaccgccgtcgtctacgggggcatctccatcaagcag
gacgcggagatgctcaaggccaaggataaatgcccccacatcctcgtcggcacccccggc
agactcaacgcgctcgtcagagacggcttgctgaagtgcaacaccgtcaggaccttcgtc
ctcgacgagtgcgacaagatgctcgaatccgtcgacatgcggcgcgacgtccagcaagtc
ttcctcgccaccccgcatgccaagcaggtcatgatacacatccctggttaa
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