Puccinia triticina (wheat leaf rust): PtA15_12A311
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Entry
PtA15_12A311 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018
RNA degradation
ptrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PtA15_12A311
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_12A311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_12A311
03041 Spliceosome [BR:
ptrc03041
]
PtA15_12A311
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PtA15_12A311
mRNA degradation factors
5'-3' decay
Lsm complex
PtA15_12A311
Spliceosome [BR:
ptrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PtA15_12A311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
77802802
NCBI-ProteinID:
XP_053025877
LinkDB
All DBs
Position
12A:complement(join(3521458..3521497,3521652..3521751,3521840..3521911,3521992..3522145,3522223..3522234))
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AA seq
125 aa
AA seq
DB search
MADRGRGGRGGSGGNSRGRGGGRSGGDDKPKREAILDLAKFADKRVRVKFMGGREITGIL
KGYDQLLNLVMDEVEEILREPEGATVTSPPKTRSLGLAVIRGTSLVVINPVDGYEEIANP
FINQQ
NT seq
378 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcgtggtcgagggggacgcggaggttcaggagggaacagtcgaggcaggggt
ggtgggcgatccgggggggatgacaaaccgaaacgcgaagctatcctggatttggccaag
ttcgctgacaaacgggttcgcgtcaagttcatgggaggtcgagagattactggtattctg
aaaggctatgatcagcttctgaatttggtcatggatgaggtcgaggagatcctgcgcgaa
ccagaaggtgccaccgtcacatcaccaccaaagacaaggtcactcgggctggcagtaatc
agggggaccagcttggtggtcatcaatccagtcgatggctacgaagaaattgcaaacccc
ttcatcaatcaacagtga
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