Puccinia triticina (wheat leaf rust): PtA15_13A18
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Entry
PtA15_13A18 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_13A18
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_13A18
03041 Spliceosome [BR:
ptrc03041
]
PtA15_13A18
03009 Ribosome biogenesis [BR:
ptrc03009
]
PtA15_13A18
03016 Transfer RNA biogenesis [BR:
ptrc03016
]
PtA15_13A18
Enzymes [BR:
ptrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PtA15_13A18
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PtA15_13A18
Spliceosome [BR:
ptrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PtA15_13A18
Complex C
U4/U6.U5 tri-SnRNP related factors
PtA15_13A18
Ribosome biogenesis [BR:
ptrc03009
]
Eukaryotic type
Pre-60S particles
Helicases
PtA15_13A18
Transfer RNA biogenesis [BR:
ptrc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PtA15_13A18
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
77803246
NCBI-ProteinID:
XP_053026175
LinkDB
All DBs
Position
13A:join(159085..159621,159687..159800,159899..159989,160107..161165,161280..162262,162359..162559,162661..162825,162899..162916)
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AA seq
1055 aa
AA seq
DB search
MEPSQEKTNSKKRLQPTTIPTQPTSSSPKRTRVSSPSDQMQSEDRAKIPSQQPVLVADEF
QTEAARQIDASSGLLPEQSGSGEEKPQQLTLSHQVRHQVALPPNYNYIPISAHRPPSKPA
RTYPFTLDPFQQVSITSIQRNESVLVSAHTSAGKTVVAEYAIAQCLENKQRVIYTSPIKA
LSNQKYRELMAEFGDVGLMTGDVTINPSASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNAMQFAEWICHTHDQPCHVVYTNFRP
TPLQHYLFPSGGDGIHLVVDEKGVFREDNFLKAMGSLNDSRGEDPASSMSGRNKQGKTKK
GGNSTKGPSDIYKIIKMIMVKNYNPVIVFAFSKRECEALAIQMSKLEFNSEEEKETVDTV
FKNAISNLSEDDQGLPQIEHILPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKVLFATE
TFSIGLNMPAKTVVFTTVRKFDGKDFRSLSSGEYIQMSGRAGRRGLDDRGIVIMMCDEQL
EPATAKNMVKGDADRLDSAFHLGYNMILNLMRVEGVSPEYMLEKCFFQFQTHANLPLLEN
ELREMQKMRSKIVIPDEELIADYAKLQEELEIRNEDFRDVINHPTHALPFLQPGRLVKVK
FGTMDFGWGCVVNFQRRLGDRGKSLGPEIKPQESFIVDVLLKISAGKSNSKQPSSKMVGG
NQTSLIKPCEPGEEGECAVVPVLLSTLDGISKIRIFLAQDLKPLDARQGALDAVTEVKRR
FPNGIGLLDPVENMGIVDETFKKLIKRIETLKESIKDHKAITKEDFQDQYKLYQEKHHVN
QLVQQIKQKISSAENVIYIEDLKKRKTVLRSLGFCNVDDIVQVKGRVACEISSGDELLLT
ELIFNGAFNDLSPEQCAALLSCFVFTEKSEQTTRLKNELEDPMKKMKEAAKKIAEEMKSS
GIDIKEEEYIDSFKTELMDVVFHWCKGSTFSEICKMTDIFEGSLIRCFRRLQELIRQMSC
AAKSIGNAELETKFTQSLDCLERPSSVVYNPSLYL
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggaaccatcccaggagaagactaacagcaagaaacggctgcaaccaacaaccattccg
acccagccgaccagctcatctccgaaacggacgcgggtcagctcaccatcagatcagatg
cagtccgaagaccgcgccaagatcccaagccaacagccagtgctagtagcggacgaattc
cagacagaagctgcccgacagatcgatgccagcagcggactcctgcccgagcagtcgggc
tcaggagaagagaagccccaacaactcaccctctcccaccaagttcgtcaccaagtagcc
ctcccacccaattacaactacatccctatctcagcccatcgccccccaagtaaaccagct
aggacatatcccttcacactcgaccctttccagcaagtctcgatcacttcaatccaacgt
aacgagagcgtactcgtctcagcccatactagcgctgggaagaccgttgttgccgagtat
gctatcgctcaatgtctcgaaaacaaacagagagtcatctacacttctcctatcaaggct
cttagtaatcaaaagtatcgagaattgatggccgagtttggggacgtggggttgatgacc
ggggacgtgacaatcaacccaagtgcatcatgtctagtcatgacaacagagattttacgg
tcgatgttgtatcgtggctcagaagtaatgagagaagtggcttgggtcatctttgacgaa
attcattatatgcgcgataaggaaagaggagtcgtttgggaggagaccatcattctattg
ccccactcggttcgatatgtatttctatcggcaacaatacctaacgcgatgcagtttgcc
gaatggatttgccatacccacgatcaaccttgtcatgtcgtttacaccaatttccgacca
accccactacagcactatttattcccatctggcggcgacggaatccatctggtcgtcgac
gagaagggcgtatttcgagaggataacttcttaaaagcgatgggatccttgaatgattct
agaggcgaagatcctgcgagctcgatgtccggtcgaaacaagcagggcaagactaagaaa
ggcggtaactcgaccaaaggcccctccgatatttacaagatcatcaagatgatcatggtc
aagaactacaatccggtcatcgtcttcgcattttcgaagagagagtgtgaggcactagcg
atccagatgtccaagttagaattcaactccgaagaagagaaggaaaccgtcgacacggtt
ttcaagaacgcgatctccaacttgtccgaagacgatcaaggcttgccacagatcgagcac
atcttaccacttttgaaacgggggattggaatccatcacggtggtctactgccgatcctc
aaggaggtcatcgagatcttgttccaagaagggctgattaaagtcttatttgccacggaa
accttctcgatcggcttaaacatgcccgccaagaccgttgtcttcactaccgtccgtaag
tttgatgggaaagacttcaggagtttgagctcgggtgaatacatccaaatgtctggccga
gctggtcgtcgaggattggatgatcgagggatcgtgatcatgatgtgtgatgaacaactc
gagccggcgaccgccaaaaatatggtcaagggtgacgcggatcgtttggattctgctttc
catctgggctataacatgattctgaacctgatgagagttgagggagtcagtcctgaatac
atgctggaaaaatgtttctttcaatttcagacgcatgccaatttgcctttactagaaaac
gagcttcgggagatgcaaaaaatgcggtcgaagatagtcataccagatgaagaattgata
gcggattacgccaagcttcaagaagaactagagatccgcaatgaagattttagggatgtg
atcaaccatccgacgcatgcgctcccattcctgcaaccaggaagattagtcaaggtgaaa
ttcggaacgatggatttcggatggggttgtgtagtgaattttcaacgaagactaggggat
cgagggaaatcacttgggcctgagatcaaaccacaagaaagctttattgtcgacgtccta
ttgaaaatctcagcgggcaagtcgaattcaaagcagccctcctccaagatggttggtggt
aaccaaaccagtctcatcaaaccatgtgaaccaggcgaagagggtgaatgcgccgtcgtt
ccggtcctcttatccaccctggatggaatctcgaaaatccgaatctttctggctcaagac
cttaaaccactggatgccaggcaaggcgcactggacgcagtgacggaggtcaagcgacga
tttcctaatgggatcggattactcgacccggtcgaaaacatgggcatcgttgatgaaacg
ttcaagaaactgatcaaacggatcgaaaccttgaaggagtcgatcaaggaccacaaagcg
atcaccaaagaagatttccaggaccagtataaactatatcaagaaaagcaccatgtcaat
caactcgtccaacaaatcaaacaaaagatctcgagtgcggagaatgtgatttacatcgaa
gacttgaagaaacggaagacggtgctgaggagcttaggattttgtaacgttgatgatatt
gtgcaagtcaagggaagggtcgcctgtgaaatttcttccggagatgagctgctgttgacc
gagttgatctttaatggcgcatttaatgatctatctcccgaacaatgtgcggctctccta
agttgtttcgtatttactgaaaagagtgaacaaacaacaaggctgaagaacgagcttgag
gatccgatgaagaagatgaaagaggcggccaagaaaattgctgaggagatgaagtcttcc
gggatcgacatcaaagaagaagaatatatcgattcgttcaagaccgagttgatggatgtc
gtttttcattggtgcaagggatctacattttcagaaatctgtaaaatgaccgatatattc
gaaggatccctgatcaggtgtttccggagattgcaggaacttatccggcagatgtcgtgt
gcggcgaagtcaatcggcaacgccgagttggagaccaagttcacacagtcgttggattgc
ttggaacggccctctagcgtcgtttacaatccctctttatacctctga
DBGET
integrated database retrieval system
