Puccinia triticina (wheat leaf rust): PtA15_16A168
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Entry
PtA15_16A168 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PtA15_16A168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_16A168
03041 Spliceosome [BR:
ptrc03041
]
PtA15_16A168
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PtA15_16A168
Spliceosome [BR:
ptrc03041
]
Complex B
Other components
Prp19-related factors
PtA15_16A168
Complex C
PtA15_16A168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Sigma70_ner
Motif
Other DBs
NCBI-GeneID:
77804726
NCBI-ProteinID:
XP_053027817
LinkDB
All DBs
Position
16A:join(1546418..1546884,1547005..1547038,1547098..1548551,1548625..1548853,1548922..1549254,1549334..1549502,1549577..1549683,1549754..1549959,1550042..1550150)
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AA seq
1035 aa
AA seq
DB search
MAISTLSQLQEVFPIASDLGRLLQSAQLSLSSNPEHLLIEQDLLTNPNNQQRWASYIQTL
TQELEREIREERGKHDSRLLGTKLASEQGRRAYQILVSVYERALIYFPRSFTLWNDYLQL
RQSFILGQPAKKFKPSSNKKKQKTNADGGDSLSVLDAHERSLTWLPQMPRLWLSYLTMLT
HPSCPAPLSLTHTRHTFDRALRTLPHSLHERIWKPYLRWAEQTAGGETCIRIWRRYLAVD
PSLTAHYVQFLVAEAQASTAHQAEGDGQDADEQEEEDDDDDGEEEDKAQEKKTRYPSKAL
VAAKLLLGLVRRARRGKYKSPDGKSPYQLLLDFLELCEKFPSKIGISLKETIRRRQAPAP
QEEAPNPAGDPPNPSAPDDSPAPFKGLIRMAGAPIPVPNRQKSRPSEDAEAYDPDTDPSN
PSKLDIEQIVEIEGLSVYKDQLGLIFTSLATYWIKRAEFDRAKETFEAGIARVVTIRDFT
TIFDAYAEFSEQYISTLMESLGENEEEEEDEEEGKNSDELELDQKMKEFEELMDRRPFLV
NDVLLRRNPNDVQEWEKRVVLFGEQEDEKVVETYLKAIETINPKKATSNFTQLFIHFAKW
YEENGVDASDENLPDLDSARKVFERAINVNFQRVDDLAEIWIEWAEMELRNEQYAEALRV
IRRATAVPANYKKKMISFHDESLAVQVRLFKSLKLWSFRVDLEESIGTVESTQKAYDTIF
ELKIANAQIVVNYGNFLEENEFWEESFKVYERGIELFSYPIVFEIWNTYLSKFVKRYQGT
KIERARDLFEQALENCPEKFVKPIFLAYAQLEESFGLAKRAMGVLERATEKVALDDRFEM
FAYYIAKATENFGLPATRPIYEKAIKSLPNAQTAEMCLRFANLEQKLGEIDRARAIYAHS
SQFCDPRTSPKFWETYHNFEIQHGSEDTFREMLRIKRAVQASFNTQTSYLAAKAAAARAA
GSSHKTELNGDRDGDGAASADPMSMLEKKEDHRAAGTFVLSKERQMQVDQAGSLDGDLTS
KTNNADEIAIDDDDD
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggccatcagcaccctcagccagctccaggaagtcttcccgatcgccagcgacctcgga
agactgctccaatcagcccagctcagcctgtccagcaacccagaacatctgctcatcgaa
caggacctgctcaccaacccaaacaaccagcagcgatgggcatcatacatccagacactc
acccaggagctcgagcgagagatcagggaggagcgcggcaaacatgactccagactgctc
ggcaccaaactggcctccgaacagggcaggagggcataccagatcctcgtctccgtctac
gaacgcgcactgatctacttccccagatcattcaccctctggaacgactacctccagctc
aggcagtccttcatcctcggccagccagccaagaagttcaagccgtcctcaaacaagaag
aagcagaagaccaacgccgacggcggcgactccctctcagtgctcgacgcacacgagcga
tcattgacctggcttccacagatgccgcggctatggctatcatacctcaccatgctcacc
catccatcctgtccagcaccactctcactcacccacacccggcacaccttcgaccgcgcc
ctgcgcaccctgccccactccctgcacgaacggatctggaaaccctatctgcgatgggcc
gagcagaccgccggcggcgaaacctgcatccgcatctggagacgctatctcgccgtcgat
cccagtctcaccgcccactacgtccagttcttggtcgccgaggcgcaggcaagcacggct
catcaggctgagggcgacggccaggatgcggacgagcaggaggaggaagatgacgatgat
gatggggaggaagaagataaggcgcaggagaaaaagactagatacccctccaaggctctc
gtcgcagccaaactgcttctcggactcgtccgaagggctcgcagggggaaatacaagtct
ccagacgggaagagcccctaccaactcctactcgacttcctcgagctctgcgagaaattc
ccgagcaagattgggatcagtctcaaggagaccatccggcgccggcaggcacccgctcca
caggaagaagcccccaacccggccggcgatcctccgaatccgagcgcccccgatgactcg
ccggcgcccttcaagggcttgatcaggatggcgggggcacccatccccgttcccaatcgg
cagaagagcaggccatcggaggatgccgaggcctacgatccagataccgatccatcaaat
ccatcgaagctggacatcgaacagatcgtcgaaatcgaaggtctcagcgtctacaaggat
cagctggggctcatcttcaccagtctggccacctattggatcaagcgagccgagttcgac
cgagccaaggagaccttcgaagccgggattgctcgggtggtgacgatccgagacttcacg
acgatcttcgacgcctatgccgagttctctgagcagtacatctcgaccttgatggagtcg
ttgggagagaacgaggaggaggaagaggatgaggaggagggcaagaactcagacgagctc
gagctcgaccaaaagatgaaagagttcgaggagctcatggatcgccgtccgtttctggtc
aacgacgtgctgctcagaaggaacccgaacgacgtccaggagtgggagaagcgggtggtc
ttgtttggggagcaggaggacgagaaggtggtggagacctatctcaaggcgatcgagacg
atcaaccccaaaaaggcaacctcaaacttcacccaactgttcatccacttcgccaaatgg
tacgaggagaacggggtggatgcgtctgatgagaacttgcccgacctcgacagcgcccgg
aaggtgtttgaaagggcgatcaatgtcaacttccaacgggtcgacgacctagcagagatc
tggatcgaatgggccgaaatggagcttcgaaatgagcaatatgccgaggcgttgagggtg
atcaggagggcgacggcggtgcctgcgaactacaagaagaagatgatcagcttccacgac
gagtctctggccgtccaagtgagactgttcaagtccctcaagctctggtcgtttcgcgtc
gacctggaagagtccatcgggacggtcgagtcgacccagaaagcctacgacaccatcttc
gaactgaagatcgccaatgctcagatcgtggtgaattacgggaatttcctagaagagaac
gagttttgggaagagtcgtttaaggtctacgagcgaggcatcgagctgttctcgtacccg
atcgtcttcgagatctggaacacgtatctgagcaagtttgtgaagcggtaccagggcacg
aagatcgagcgggcccgggacctcttcgagcaggcgctcgagaactgcccggagaagttc
gtcaagccgatcttcctggcctatgcccagctcgaggagtcctttgggctcgctaaacgc
gcgatgggcgtcctcgaacgggccacggagaaagtcgcgctcgacgaccgcttcgagatg
tttgcgtactatatcgccaaggcgaccgagaacttcggcttgcccgccacccgtcccatc
tacgagaaagcgatcaagtcgttgccgaacgcgcagacggccgagatgtgtctgcggttc
gcgaatctcgagcagaagctgggcgagatcgaccgggctagagctatttatgcccattcg
tcccagttctgtgatcctcgaacgtccccgaagttttgggagacgtaccacaacttcgag
atccaacatggaagcgaagacacgttccgcgaaatgttgcggatcaagcgggccgtgcag
gcgtcgttcaacacccagacgtcctatctcgctgctaaagcggcggcagccagggccgct
gggtcttcccacaagactgaactcaatggggacagggatggagatggggctgcaagcgcg
gatccgatgagcatgctggagaagaaggaagaccatcgggcggctggaaccttcgtgctg
tcgaaggaaagacagatgcaggtcgaccaggctgggtctctggacggtgaccttaccagc
aagactaacaacgccgatgagatcgccatcgatgacgatgatgactag
DBGET
integrated database retrieval system
