Puccinia triticina (wheat leaf rust): PtA15_17A170
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Entry
PtA15_17A170 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K13126
polyadenylate-binding protein
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03015
mRNA surveillance pathway
ptrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PtA15_17A170
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_17A170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_17A170
03041 Spliceosome [BR:
ptrc03041
]
PtA15_17A170
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PtA15_17A170
mRNA cycle factors
Stress granule specific factors
PtA15_17A170
Spliceosome [BR:
ptrc03041
]
Complex C
Other components
Complex C specific factors
PtA15_17A170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_7
RBD_DEAH11
RRM_occluded
DUF4523
RRM_YTH1
YflT
Beta-barrel_YknX
Motif
Other DBs
NCBI-GeneID:
77805153
NCBI-ProteinID:
XP_053028243
LinkDB
All DBs
Position
17A:complement(join(2070765..2070967,2071046..2071583,2071668..2072659,2072737..2073160))
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AA seq
718 aa
AA seq
DB search
MSSAVAAAAAPSEIPGSTKDTSAPSVQNNDAPVATNPPAEPTPAGAPAAAPAAAAAAPAP
AAPVPNASVPSSIATATPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVASIRVC
RDAVTRRSLGYAYVNYLNAADAERALEQLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFI
KNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQ
LNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAV
QSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQ
QKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDDKGTSKGFGFVCFS
SPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQQIAAAGIPGA
PYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPGGMPPRPRYAPPGQMAPMGMPGGTPYP
PHPQDYPGYPVGGPVPPVGGMRGIPGPPAHLSGPNPPNFRGANGGPMPPMNGRGPAPGSN
GPGPMRGAPQGREGYPPSALSGRAVSHRVSDLAPVGLSPAALAKASPAEQKQMLGEALYP
QIAEKQPEKAGKITGMILEIENAELIHLLENRPALDAKVQEAVQVLDEYERKDAKGEF
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgccgtcgctgccgctgctgctccgagtgaaatccctggctccaccaaagat
accagtgccccaagtgttcagaacaatgacgcaccggttgccaccaatcctccagccgaa
cccactccagccggagcacccgctgccgctccggccgccgccgctgctgctcccgcccct
gcagcccccgtcccgaacgcctcagtcccctcgtcaatcgccacggctacccccaacgcc
agccctgctagccaacctaacacctcgctctatgttggtgagctggacccaacagtcacc
gaagcgatgttgtacgagatcttcagcatgatcggaccggttgccagcatccgagtctgc
cgtgatgcagtcacccgtcgttcgttgggctatgcctacgtcaactacctcaatgctgcc
gatgccgaacgtgcgctcgagcagctcaattactcactgatcaaaaacaaggcttgtcgg
atcatgtggtcgcagcgtgacccgtccttgcgcaagactggtcaaggcaacatcttcatc
aagaaccttgacgagacgatcgacaacaaggccctgcatgacacctttgctgccttcggc
gacattctctcctgcaaggttgccaccgacgagcatggtgcctcgaagggctacggcttc
gttcactacgtgaccggagaatctgccgaggcagcaatcaagggcgtcaacggcatgcaa
ctgaacgacaaggtggttttcgttggtatccacgttcctcgaagggacagacaggcgaag
atcgatgaagtccgatcgcaattcaccaacctctacatcaaaaacttgcccaccgaaacc
accaccgaagagctcaacgaggtctttggcaaattcggtccgatcacttcggctgctgtc
cagtcggacgaacacggcaagcaccgtggctttggtttcgtcaactacgaaaaccacgaa
tctgcgagcaaggccgtcgacgccttgcacgacaaggattacaagggcaatgtcctgtac
gtcgcaagggcccagaagcggacagagcgggatgcagagctcaagaaggcccacgaacag
caaaagtacgagacgactctgaaatatcaaggcgtgaatctttacgtcaaaaatcttgat
gacgaatacgacgacgagaagttacagaacgagtttacgcccttcggcacgatcacatcc
tgcaaggttatgaaagacgacaaaggaacctccaaaggtttcggcttcgtgtgtttctct
tcgcccgatgaggccaccaaagctgtggccgaaatgaacggcaagatgttgggctccaag
cccttgtatgtatcgctagctcagcgaaaagaagtcaggaagcaacagttggaagcccaa
atgtcgcagcgctcacagatgcgcagccagcaaattgccgctgctggtatccctggtgct
ccttacggtgcgccaccgaacccgatgtactttggaggtgcggctgcttacccaccacac
ggtggccgagggatgatgtacccgccgaacggaatgcccggcggaatgccacctcgacct
cgctatgcacccccaggacaaatggccccgatgggcatgcccggcggcacaccataccca
cctcatccgcaagactacccgggctaccctgtcggcgggccggtgcctccggtgggcggc
atgcgaggtatacccggccctccagcccatctcagtggccctaacccgcccaacttccgc
ggcgctaacggcgggcccatgcctcccatgaacggccgcggtcccgctcccggatccaat
ggccctggccccatgcgtggcgctccccaaggccgcgagggctatcctccttcggctctc
tccggccgcgccgtcagtcaccgggtctcagatctcgcgcctgtcggcctgagtcccgcc
gctttggccaaggctagtcccgccgaacaaaaacaaatgctcggtgaagctctgtacccg
cagatcgccgagaagcagccggagaaggccggaaagatcaccggcatgatcctcgaaatc
gagaacgccgagctcatccatctgctcgagaaccggccggcattggacgccaaggtgcag
gaagccgtccaagtcttggacgagtatgaacgcaaggacgccaaaggcgaattctaa
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