Puccinia triticina (wheat leaf rust): PtA15_18A104
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Entry
PtA15_18A104 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_18A104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_18A104
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PtA15_18A104
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PtA15_18A104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
SHOCT-like_DUF2089-C
Motif
Other DBs
NCBI-GeneID:
77805506
NCBI-ProteinID:
XP_053028603
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Position
18A:complement(join(862599..862619,862711..862760,862869..863005,863111..864272,864346..864481,864602..864856,864969..865100,865436..865669,865785..865805))
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AA seq
715 aa
AA seq
DB search
MAQRKLQADIDRVLKLVQQGVTLFEETFDKMTHATNQTSKDKAEADLKTSIKKLQRQRDQ
IKTWLQSNDIKDKSALMEHRKLIETQMERFKACEKEMKTKAFSKEGLSAQQKLDPKEVAK
MEMSHWVSTMVDELGQQIERTEAEVELLRSQTKKKKPTSGSDGRSSELEALNDRRRWHIG
KLELIMRLLENGQISPERVGEVKDDIQYYVESNVEEDFTEDDDLYESLNLQEEEEHYGLH
DDLLSSHDTSSIIEDSNLSGEKSPVKEKMSISGAQILRGPSVRKPTMESGTVRPAIVSGR
TGVVTGMVLPTGSAPRTTPAPLPSLRYASAAAAAASSNVANTTSVPSSAKSPGPIPAVPQ
RSNSLSFSGTASGSLPAQPSAESPKKQSQQAPHRPFAAVASPDAKVAALPASSAPRSMLS
GSDPSSTSQDLISQSADGGSSSSLVHNPSGQSNQSGQSSQSAAEPSPNQNTDRSPSPSNS
QKSRQSPPQADGGAMESVPTSGEQKPVSDRRGSETVSGEERQEEGKQSNLQVNNNGREVE
GGQTNNPAQENKSVSSLADLVETYEHLKAHTPSLAEMQKVIETGISGLPQIQDAEKPYYY
APRNPYPTSSHYPQQPMAFEKRPAIWSEIEVEVLFYLFYYHQGGYLQYLAAKELKKRAWR
FHKYYLTWFQRAKNPEEMADDYEKGSYTYFDWEADWLMRTKTPFQFDYKHLEDSL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcccagcggaagcttcaggccgatatcgaccgtgtgctgaaactggtccagcaaggt
gtcacactctttgaggaaacattcgataaaatgacacatgcgaccaatcagacatcgaag
gacaaggccgaggctgatctcaagacttcgatcaagaagctacagcgtcagagggaccag
atcaaaacttggctgcagagtaacgatatcaaggataaatcggctctcatggaacatcgc
aagttgatcgaaacacaaatggaacggttcaaggcttgcgaaaaagagatgaaaacgaaa
gcatttagcaaagaaggactcagtgctcagcagaaactggatcctaaggaagtggccaag
atggagatgagtcattgggtttccacaatggtcgatgaactgggccagcagattgagcgg
acggaggcagaagtagaactattgcgtagtcagaccaagaagaagaaacctacctccggc
tctgacggtagatcaagtgaactcgaagctctcaatgaccgtcgaaggtggcacattgga
aaactcgagctaatcatgcgattgcttgaaaatggtcagatttcgcctgagcgtgtcggt
gaagtcaaggatgatattcaatactacgttgaatcgaatgttgaggaagacttcaccgag
gatgacgacctgtatgaatcgcttaatcttcaagaggaggaggaacattatggcctacat
gatgaccttctttcatcacacgatacaagttcaataatcgaagacagcaatctctctggt
gaaaaaagccccgttaaagaaaaaatgtcgatttcaggcgctcaaatcctgcgaggaccc
agtgtccggaagccgacgatggaatctggcacagtgagaccagccatcgtttctggaaga
actggcgttgttacagggatggtgctccctaccggatctgcaccacggaccacgcctgca
cccctcccatccttacgttatgccagtgctgccgcggctgctgcttcatctaatgttgcg
aatactacaagtgttccgtctagtgccaagagtccgggtccgatacccgccgtcccgcaa
cgctcaaattcactctcgttcagcggcaccgcctcgggatctttgccagctcaaccatca
gccgaatcgcccaagaagcaatctcagcaagctccgcacaggcctttcgctgccgttgct
tccccggacgccaaggttgccgcgctccctgcatccagtgctcctcgatccatgctttct
ggctcggatccttcgagtacgtctcaggatctaatctctcaatcggctgacgggggaagc
agttcctcactcgtgcataacccatcgggtcaatcgaatcaatcagggcaatcaagtcaa
tccgccgctgaaccgtcaccaaaccagaacaccgatcgatcgccgagcccctctaactca
cagaaatcacgccaatctccacctcaagcagatgggggcgcaatggagagtgttcctact
agtggggaacaaaagcctgtgagcgaccgacgaggatcggagacagtgtccggagaagaa
aggcaagaagaaggcaaacagagcaacctccaagtcaacaacaatggtcgtgaagtggaa
ggggggcagacaaacaaccctgcacaagagaacaagagtgtctcctctctggccgacttg
gttgaaacttacgaacacctcaaggctcacacacccagcctggccgagatgcaaaaagtg
atcgagactggaatttctggcttgccccagatccaggatgccgagaagccttattactat
gcccctcgcaacccctaccctaccagttctcattatcctcagcaaccaatggcattcgaa
aaacgtccagctatttggtcggaaatcgaggtcgaggtgttattctatctgttctactat
caccaaggtggttatttacaatacttggctgcaaaggaactgaagaaacgcgcttggaga
ttccacaagtactatctcacgtggttccaacgagccaagaacccggaagaaatggcagac
gattatgagaaaggctcttacacttattttgactgggaggctgattggctgatgcggact
aagaccccgttccaattcgattacaagcatttggaagactcgctgtaa
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