KEGG   Puccinia triticina (wheat leaf rust): PtA15_1A167
Entry
PtA15_1A167       CDS       T09180                                 
Name
(RefSeq) uncharacterized protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ptrc  Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018  RNA degradation
ptrc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptrc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PtA15_1A167
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PtA15_1A167
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptrc03019]
    PtA15_1A167
   03041 Spliceosome [BR:ptrc03041]
    PtA15_1A167
Messenger RNA biogenesis [BR:ptrc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PtA15_1A167
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PtA15_1A167
Spliceosome [BR:ptrc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PtA15_1A167
SSDB
Motif
Pfam: LSM SM-ATX LSM14 Hfq
Other DBs
NCBI-GeneID: 77806060
NCBI-ProteinID: XP_053016384
UniProt: A0ABY7C800
LinkDB
Position
1A:join(1087504..1087660,1087748..1087861,1087943..1087983)
AA seq 103 aa
MSDQNEKGSPSDDKALNVPGPASGTGGTPSDFLKQVVGHQVTVRLNSGVDYQGILSCLDG
YMNIALENTEEYVNGIKRNSYGDAFLRGNNVLYISRVAPERNS
NT seq 312 nt   +upstreamnt  +downstreamnt
atgtccgatcaaaacgaaaagggctctccatctgatgacaaggcattgaacgtacccggt
ccagcctcaggtaccggcggaactccatctgatttcctcaaacaagtcgtgggtcatcaa
gtaacagttaggctgaatagtggagtcgattatcaaggtattttgtcttgtttggatggc
tacatgaacatcgctcttgaaaataccgaggagtatgtcaatgggatcaagcggaacagt
tatggggatgcctttctgagggggaacaatgttttgtacatcagtcgagtcgcacctgag
cgtaactcataa

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