Puccinia triticina (wheat leaf rust): PtA15_2A549
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Entry
PtA15_2A549 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_2A549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_2A549
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PtA15_2A549
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Gene cluster
GFIT
Motif
Pfam:
Rcd1
VPS13_N
Motif
Other DBs
NCBI-GeneID:
77807474
NCBI-ProteinID:
XP_053017787
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Position
2A:complement(join(5074116..5074251,5074361..5074913,5075004..5075318,5075389..5076001))
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AA seq
538 aa
AA seq
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MQDGMCAACVEGSCAARTGRSSPPPRRVPVAGGSFPKNTNPKHTQPTTPTHSPTSDLSPS
IFILTIMLHAFPQQTQQQQQQQQQQQQQQQPASQSYFRSSPPANPIQSQPGHLNSAPLNS
NSQNRLINNSSASSTNTNNQSAHNFSNLHLGSLISPNLSSNSHQQRNLLLGALNSPIAPL
SASRESYGSLINPNNSSTPSQIQNGIASRVDTPSLIGPPSVNTPSSAGLPINVPPHILSN
SSGKLLLSSSKHGSPTGAEHPKNSQPENEKIHYLIVDLLNPLTRELALLELSKKREQWDD
LALVLWHSFGVMSCLLQEIVAVYPLLSPPSLTANASNRVCNALALLQCVASHNETRALFL
QAHLPLFLYPFLNTTSKTRPFEYLRLTSLGVIGALVKQNDNSEVINFLLSTEIIPLCLRI
METGSELSKTVAIFIVQKILLDEMGLAYICQTYERFYAVGTVLSNMVNQLVETQAVRLLK
HVVRCYLRLSDNLRAREALRACLPEPLRDATFSQVLKGDLITKRCLASLLLNLSDRVE
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatggaatgtgtgctgcgtgcgtcgagggctcgtgcgcagcgcgaactgggcgg
tcttctcctccacctcggcgggttcccgtcgccggtggcagttttccgaagaacaccaac
ccaaaacacactcaaccgacaacaccaacacactcccccacttccgatctcagtccatcc
atcttcatcctcactatcatgctccacgccttcccccaacaaacgcaacagcaacagcaa
cagcaacagcagcagcagcagcaacaacagccagccagccaatcctactttcgttcatca
ccacctgctaatcccattcagtctcagccaggccacctaaactcagcaccgctcaactca
aatagccagaaccgcttgatcaacaacagcagtgctagcagcaccaacaccaacaatcag
tctgctcacaacttcagcaacctccacctcggctcgctcatcagtccaaacctcagctca
aactcacatcaacaacgcaatctactccttggcgctctcaacagccccatcgcaccccta
tcggcttctagggagtcgtacggctcgctgatcaaccccaacaacagctcgacgccctct
caaattcaaaatggcatcgccagccgagtagatacaccatccttaattggtccaccctcc
gtgaataccccaagctctgctggactgcctatcaacgtacccccgcatatcctctcgaat
tcaagtggcaagctgctcttgtcatcatccaagcatggctcgccaaccggcgccgagcat
cccaagaactcgcaacccgagaacgaaaagattcactacttgatcgtcgacctcttgaac
ccactcaccagagaattggccctcttggaactcagcaagaagcgcgaacaatgggacgac
ctcgctctcgtcttatggcactcatttggtgttatgtcttgcttattgcaagagatcgtc
gccgtctatccactcctatcgcctccttccttaaccgccaatgcatccaaccgggtctgt
aacgcacttgcactcctccaatgtgttgcatcccacaacgagactcgagcgttattcttg
caagcgcatctgcccctatttctttacccgttcctgaacaccacctcgaagacccggccg
ttcgaatacctccgactgacttcgctcggggtcatcggcgccttggtgaagcagaatgac
aactcagaggtgatcaacttcttgctctccacagagatcatccccttatgtctccggatc
atggagaccggctctgagttgagcaagaccgtcgccatcttcatcgtccaaaaaatcctc
ctcgacgagatgggcctcgcctacatctgtcagacttatgaacgcttctatgctgtcggg
acagtgctcagcaatatggtcaaccagttggtcgagacccaggctgtgagactcttgaag
catgttgtgagatgttacttgagattaagtgataacttgagagctagagaagctttaaga
gcttgtttacccgaaccattacgagatgcaacgttcagtcaagtcttgaagggagactta
atcacgaaacggtgtttggctagtttgctattgaacctatctgaccgagtcgaatag
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