Puccinia triticina (wheat leaf rust): PtA15_2A567
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Entry
PtA15_2A567 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_2A567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_2A567
Enzymes [BR:
ptrc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PtA15_2A567
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PtA15_2A567
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PtA15_2A567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_LRWD1
TrbL_4
Motif
Other DBs
NCBI-GeneID:
77807494
NCBI-ProteinID:
XP_053017805
LinkDB
All DBs
Position
2A:join(5193724..5194022,5194089..5194231,5194316..5194648,5194751..5195029,5195102..5195440,5196057..5196475,5196530..5197482,5197615..5198299,5198402..5198422)
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AA seq
1156 aa
AA seq
DB search
MSKEDQQPSASRPGRQHTHRASMASISSDAPPGYSDEPSSSSAAACAQPAPPPAPKPAKA
GEGRSPADLEVGPPPDDALPPDFSVYQASYTSDKLGNITSHDPHLNTDGEALCRFILLHI
SSPPELIVKLSGTHEDLRTETTTEYVNGRTEYRTREQRQTVTDFSFTMQAASEPALDHGV
RRLYIVGDGEVVGRGGQRRERGRWENGKDLGLLSPAGAGGEEGAALPGRGRTGVGFRERR
KADRIADETKRLGYPPFVPSWMFPRDAFSCEPSRPPDHLLGPDWREKCSSYLDSVVRRGY
YRYQKPGREASAQVERELRQWCDDYCASTKYLKELRVEKAVFGWNLALLEEELLKLLNST
PHLSSTHFSVDFYTTSSEIIVRPVNMLSKLFSLSGLTKFLLTISLVYPLLWLVRFLILGA
EYDVVRVGYPLVCWHEAGDSLEGQLAGRSELDWFADHHGRISRASQNQQQQQHPQQSIYQ
PGSHPPYLSSPAPGHPPNPNSLASLHQPITQQPQPSTLPTPLTPSWAKQVQHAQISRASS
AAHHHARAAQLQIRGQASAALTITDPNRPPKPVILHHNPASTTNTNQGPSSKYSDHPDPL
RHQTSDPTHPSSPSDTSLTSSTATANAHNDPAGPLTPSAQPSRSPANTAWTTVDMGGLKL
KSLSEALFSYHFLTTLYIPHNSLTSLSPSIAQLSSLTILDVSSNKLTALPPELGMITTLQ
HLFVFDNHLTSLPPELGSLHQLEELGVEGNPLTDSLLSTIQKEGTASLVAYLRDSCPVPL
PPSERDWITIDADLASSSHNDHHHHHHHHHHGYSPPPETFTTMCYNILCERYATDRMYGY
TPSWALNWEYRKDLILQELMQYGADIICLQEVDVEQYEDFFVQSLKDQGYEGVFYPKSRA
RTMGSEERRHVDGCATFFKTSMFQLIERECVEFNQIPMRSESHKTEDMFNRVMTKDNIAV
IALLEHRQSGTRQIVANVHIHWDPEFRDVKLIQTAMLMDQISEISSRFARLPKRTTLSNN
YRVAPSYADGSQIPTIICGDFNSIPQSGVYDYLSTGLIPPSHPDFCRNNYGPYTQYGIKH
ALKLKSAYSNLDSKELPFTNYTPGFKGVIDYIWYSTESLQVIGLLGKIDDGYLKKVVGFP
NAHFASDHVPVKPVAS
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaagaccagcagccatccgcgagccggccgggccgccagcacacccatcgc
gcctccatggcatcaatcagctcggacgcaccgccgggctactcggacgaaccctcgagc
tcgtcggctgccgcctgcgcgcagcctgcaccaccacccgccccaaagcctgcgaaagcc
ggcgagggtcggtcgccggccgacttggaagtcgggccgccgcctgatgacgccctgccc
cccgatttctcggtctatcaagcctcgtacacgtctgacaaactggggaatattactagt
catgacccgcatctcaacacggatggagaggccctgtgtcggttcatactcttgcatata
tcttccccgcccgagttgattgtgaagctgagtggaactcatgaagacttgcggacggag
acgacgactgagtatgtgaacggacggacggaataccgcacgcgagagcagcgccagaca
gtgacggacttcagcttcacgatgcaagcggcctccgagcctgcgctcgaccacggcgtc
cggcggctctacatcgtgggggacggcgaggtggtgggccgaggcggacagcgccgcgag
cgagggcgctgggaaaacgggaaggatctcggcctgttgagcccggccggggcgggcgga
gaggagggcgcggctctcccgggcagaggcagaactggggtcgggttcagggagagacgg
aaggctgacaggatcgctgatgaaaccaagagactggggtacccgccctttgtgccctcc
tggatgttcccgcgggatgcgttctcctgcgagcccagccggccgcccgatcatctgctc
ggccccgactggcgcgagaaatgctcgagctacttggactcggtggtccggcgcggctac
tatcgctaccagaagccggggcgcgaggcgtctgcgcaggtggagcgagagctgcggcaa
tggtgtgatgattactgtgccagtaccaagtatctgaaagagcttcgggtcgagaaggcc
gtgtttggctggaacttggccctcttggaagaagagctgctcaagctgctcaactcgacg
cctcatctgagctcgacgcacttctcggtggatttctacacgacctcctcggagatcatc
gtgcgcccggtgaacatgctgtcgaagctcttcagcctctcggggctgaccaagttcctg
ctgacgatcagcctggtctacccgctcctctggctcgtccgttttctcatcctgggtgcc
gagtacgatgtggtgcgtgtgggctatccgctggtgtgctggcacgaagcgggcgatagc
cttgaggggcagttggcgggccggtctgagctggactggttcgcggaccaccatggccgc
atctctcgcgcctctcagaaccagcaacaacaacaacaccctcagcaatccatctaccag
ccaggatcccaccccccctatctctcctcacccgcacccggccacccccccaacccaaac
agtctagccagcctccaccagcccatcacccagcaaccccagcccagcactctcccaacc
ccactcaccccctcatgggcaaagcaggtccagcatgcacagatctcccgcgcctccagt
gccgcccaccaccatgcccgcgccgcacagctccagatccgcggccaggcatccgccgca
ctcaccatcaccgaccccaaccggccccccaagccagtcatcctccaccacaacccagcc
agcaccaccaacaccaaccagggcccctcatcaaagtatagcgaccatcccgaccccctc
cgccaccagaccagcgaccccacccatcccagcagcccatccgataccagtctgaccagc
tcaaccgccaccgccaatgcccacaacgaccccgccggccccctcacccccagcgcccag
cccagccgatcacccgcaaacaccgcctggacgaccgtcgacatgggcggcctcaaactg
aaatcactctccgaagccctcttctcctaccacttcctcaccaccctctacatcccccac
aactccctcacctcgctctccccctccatcgcccagctcagctcgctcaccatcctcgac
gtctcctccaacaagctcaccgccctcccccccgaactcggcatgatcaccaccctccag
cacctcttcgtcttcgacaaccatctcacctccctcccccccgaactaggcagcctccac
cagctcgaagaactcggcgtcgaaggaaacccgctgacggacagcctgctgagcaccatc
cagaaggaaggcaccgcctccctcgtcgcctacctccgcgactcctgtcccgtgcccctg
cccccctccgagcgggactggatcaccatcgacgccgaccttgcctcctccagccacaac
gaccaccaccaccaccaccaccaccaccaccacggctactccccgcccccggagacgttc
acgacgatgtgctacaacatcctctgcgaacggtatgcgaccgaccggatgtacggctac
accccctcctgggccctcaactgggagtaccgcaaggacctcatcctccaggaactcatg
cagtacggcgcagacatcatctgtctccaggaggtcgacgtcgagcagtacgaggacttc
ttcgtccagagcctcaaggaccagggctacgagggcgtcttctaccccaaatcgagggcc
cggacgatgggcagcgaagaacgaagacatgtggatggctgtgctacattcttcaaaacc
tccatgtttcaattaatcgagagggaatgcgtcgagttcaaccaaatccccatgagatcg
gaatcgcacaagacagaagatatgttcaaccgagtgatgaccaaggacaacatagcggtc
atcgcgctcctcgagcatcgccaatcgggcacccgacagatcgttgcgaacgtacacatc
cactgggacccggagttccgagacgtcaagctgatccagacggcgatgctgatggaccag
atctcggagatctcgagccggttcgcacggctcccgaagcggacgaccctgagcaacaac
taccgggtggcgccgagctatgcggacgggagccagatcccgacgatcatctgcggggac
ttcaactcgatcccccagtcgggcgtctacgactacctctccaccggcctcatccccccc
agccaccccgacttctgcaggaacaactacggcccgtatacccagtacggcatcaaacat
gccctcaagctcaagtcggcctactccaacctcgactccaaggaactcccgttcaccaac
tacacccccggcttcaagggcgtcatcgactacatctggtactccaccgaatccctccag
gtcatcggcctcctcggcaagatcgacgacggctatctcaagaaggtcgtcggcttcccg
aacgcccatttcgctagcgaccatgtccccgtcaagcccgtcgctagttaa
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