Puccinia triticina (wheat leaf rust): PtA15_3A214
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Entry
PtA15_3A214 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_3A214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_3A214
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PtA15_3A214
mRNA degradation factors
5'-3' decay
Lsm complex
PtA15_3A214
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Ortholog
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GFIT
Motif
Pfam:
LSM
Rad21_Rec8_N
Hfq
Motif
Other DBs
NCBI-GeneID:
77808055
NCBI-ProteinID:
XP_053018404
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All DBs
Position
3A:join(1952494..1952557,1952637..1952705,1952771..1952982,1953059..1953235)
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AA seq
173 aa
AA seq
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MDNFLTNVPFTTSGALVDIVDKKILVSLRDGKKLIGVLRSYDQFANLVLQDTIERIHVRI
ESEEDAQQDNQTEQDGSDNQRTQKNKTKKGICKYTDVWRGIYLVRGENVVLLGEIDLDKE
DEIIKQFECDTVETVSELQRQEVQRKTDRVKKDEKILFDRLGFSKEGDEDDRY
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atggacaactttctgactaatgtcccattcacaacatcaggcgccctagtggacatagtc
gacaaaaaaattctggtgtcgttacgggatggtaaaaagttgatcggcgtactaaggtcg
tatgaccaatttgccaatcttgtattacaagacacgatcgagcgcatccatgtacgaatc
gaatcggaagaagatgctcagcaggataatcagaccgagcaagatggcagtgacaaccag
aggactcagaagaataagacgaagaaggggatctgtaaatacacagatgtctggcggggt
atctatctcgtcagaggagagaatgtggtcctgttaggcgaaatagacttggataaggag
gacgagatcatcaagcagttcgagtgtgataccgtcgagaccgtctccgaactccaacgc
caggaggtccagcggaagacagaccgggtcaagaaggatgagaagatcctcttcgatagg
ctcggcttcagtaaggaaggtgatgaggacgaccgctattga
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