Puccinia triticina (wheat leaf rust): PtA15_3A899
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Entry
PtA15_3A899 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PtA15_3A899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrc03021
]
PtA15_3A899
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_3A899
Transcription machinery [BR:
ptrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PtA15_3A899
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PtA15_3A899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCHC
zf-CCCH_2
Torus
zf-CCCH_4
zf-CCHC_2
AIM3
zf-CCCH_9
PNISR
Motif
Other DBs
NCBI-GeneID:
77808807
NCBI-ProteinID:
XP_053019083
LinkDB
All DBs
Position
3A:join(8572154..8572727,8572801..8573405,8573483..8573608)
Genome browser
AA seq
434 aa
AA seq
DB search
MAISPVPPPPPSTLPVPVSTTIVISPDLRHVELEIEKHLKEEQGLKLDTDQQLCPQHLLH
LASISQPSSAENHQPPCQLGTDCPFRHVSPSGLNFTAPPAGSAASNRNHHPHHHHHSSHS
KTVCKHWLRGLCKKGNSCEFLHEYNLRTMPECWFFGKYGFCSNGDECMYLHVDERMRVLE
CMDFRRGFCPKGPECSKKHIRRPICRLYMAGFCPYEKTCQLGGHPKFEVDPTPRGNPYIN
SFNPFDRPRGDPDRPIYNGPISINKGPLGISKHHHHHQQQQQQQQQQQQQQQQQINPQQQ
PSLPQHPNPQAHNPPLNPHLIQHQINLKTNNILNNHHPLNPLLLNPPSSTNPPAQHHPNQ
HLNNEGLLNDEHWVQTDSGPRKKRNLDEVTCFKCGQRGHYANTCPNPMVPGNRGGVVRGP
GGRLLGEEDLLPVL
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggccatctcacccgtcccaccacccccaccatccaccctcccagtgcccgtcagcact
accatcgtcatcagcccagacctcaggcatgtcgagctcgagatcgagaaacatctcaag
gaggagcaaggcctcaaactggacaccgaccaacaactctgcccccaacatctactccat
ctcgcctcgatcagccagccatcctccgccgagaaccaccaaccgccctgccagctaggc
accgactgtcccttccgtcatgtcagcccatccggcctcaacttcaccgcccctcctgcc
ggctcagcagcatccaaccggaaccaccacccccatcatcatcaccactcctcccactcc
aaaacggtttgcaaacattggctgcgcggactatgcaaaaagggcaactcgtgcgaattc
ttgcacgagtacaacctcaggacgatgcccgaatgttggttctttgggaaatacggattc
tgcagtaacggggatgaatgcatgtacttacacgtcgatgaacggatgagagtgctcgaa
tgtatggacttccgaagagggttctgtcccaaaggtcccgaatgttcaaaaaaacacatc
agaaggccgatctgtcgattatacatggccggattttgtccctatgaaaaaacctgtcag
ttgggtggccatccgaagtttgaggttgacccaaccccgagggggaacccgtacatcaac
tccttcaatcccttcgatcggccacgaggagatcccgatcgaccgatctataacgggcca
atatccatcaacaaaggcccgctaggaatcagcaaacaccatcatcatcatcaacaacaa
caacaacaacaacaacaacaacaacagcagcagcagcagcagatcaatcctcaacaacaa
ccctctctccctcaacatcccaacccgcaagctcataatcccccgctgaaccctcatttg
atccaacaccaaatcaacctcaaaactaataacatccttaacaaccatcacccactcaac
cccctcctcctcaacccgccctcttcaactaaccctccggcccagcatcatcccaaccaa
catcttaataacgaaggtcttctgaatgacgaacattgggttcaaactgattccggacca
cggaagaagcgaaacttggacgaagtcacctgttttaaatgtggtcaaagaggtcattac
gcaaacacatgtcctaatccaatggtccctggtaatagaggtggcgtcgtcagaggtcct
ggaggccggcttctgggcgaagaggatctcttgcctgtcctataa
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