Puccinia triticina (wheat leaf rust): PtA15_5A901
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Entry
PtA15_5A901 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PtA15_5A901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrc03021
]
PtA15_5A901
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_5A901
Transcription machinery [BR:
ptrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PtA15_5A901
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PtA15_5A901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Zn_ribbon_RRN7
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
77810607
NCBI-ProteinID:
XP_053020881
LinkDB
All DBs
Position
5A:complement(join(7793553..7795037,7795130..7795276,7795351..7795503,7795605..7795757,7795871..7796158))
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AA seq
741 aa
AA seq
DB search
MPLYTPDEATPVPTVQVPNERSTANVPRPPTMQGLPAPPPSIGYDVNEFRRFFKFGLDQL
QNNNKYIINDLTTLASVYHHRMSTYIVKDIEQHIRNSHPAHRLIGFYVLDSICKNLGHPF
PELFKPFIERLFLIAYRDIEDVDPITKVKFEELLGTWRTGSANQTELFDPDIQRRIEESV
FGNWRRDDSIASQAFLNGIKQQPAIATPAEKASILFDVRRILSEREQVAAAYPGDQTNLA
QIATLQQLEQLIATQQLTISQVDDIRKQLQPLKATILPSAPVECGIPPSHLPAVLPQMAP
LPTSLPHPIQSYGDSESLASLARLLETNPNVLLQAVNQSSHHVPQHPSIPQHQSPFNFDS
TGQLGFDNVAQHPPPIITSSAPQLEQEPPIPNMFDSQQLAAALAYLNPTAHNSSLPEFGT
EERPIEIPHQPSPAPSTLSTSESLPASQTDPAIVEYENMIAGLPIELQNSSINRVKPAEI
ADVLYSHIPQFCRQDGSRFLRGKIGSQRASEQLDRHFRLQRRVRESGQRAQQRMWSQLRS
EWLDSHDFGTAGNGQNSQAEGSQQNKRKSMEDEKSVTELSKKSIIRPSSPGLASQPCPIC
QESFETRFDEDEGEFYWTNAIELTREAGKRVVYHATCHYETIRNKARMKIKSELEENRLK
RIQMEADRKIKIESGNIEQANGVEPDQVGEVGNTCNNDNQSVGSTGDGDNCLLQIDETFP
TESSHCLKKQRINSPPAKAPS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcctctatacacgccagacgaagctactcctgttccaaccgtccaagtccccaacgaa
cgctcgacagccaacgtgcctcgacctccaacgatgcaaggcttgcctgccccaccaccc
tcgattggctatgatgtcaacgagtttcgaaggttttttaaattcggtctcgaccaactc
cagaataacaataaatatatcatcaacgatctcaccaccctagctagtgtctaccaccat
cgtatgtcaacctacatagtcaaggatatcgaacagcacattcgaaatagccatcctgct
catagattgattggattttacgtgttggattcaatctgcaaaaatttaggccatccgttt
ccggagctattcaaaccattcattgaacgattgttcttgattgcttatcgagatattgaa
gacgtcgatccaatcaccaaggtcaaattcgaagagctattaggaacgtggagaacggga
tcggccaaccaaaccgaactctttgatccggatatccagagaagaatcgaagaaagcgta
ttcggtaactggcggcgagacgattcaatcgccagccaagcattcctcaatgggatcaaa
cagcaaccagcaattgccacaccagccgaaaaggctagcatattgtttgatgtacgcaga
atcttgtcggaacgcgaacaggtcgctgcagcttatccaggcgaccaaactaacctggct
caaattgccactctccaacaacttgaacaactaatcgcgactcagcaactcaccatcagc
caagttgatgacattcgaaaacagctacagcccctcaaagccaccatcctaccgtctgcc
ccagttgagtgtggcattccaccatcacatctaccggcagttctacctcagatggcacct
ttacctacctctctccctcacccgattcaatcttacggagactctgaatcgcttgctagt
cttgccagacttctagaaaccaatccaaatgtcctcctccaggcagtcaatcagtcgtca
catcatgttccccaacatccttcaatcccgcagcatcaaagccccttcaactttgattca
actggccaactggggtttgataatgtagcccagcatccaccgcccataattacttcatca
gcccctcagcttgaacaagaaccgccaattccgaatatgtttgacagccaacaactggct
gccgctcttgcttatctcaatccgacagctcacaacagttcgttacccgaattcggtact
gaagagcggccaatcgagattccccatcaacccagccccgcgccatccacgctcagcacc
agtgaaagtctcccggcctctcaaacagatccagctatagtggaatacgaaaacatgatc
gccggattaccaatagagcttcaaaattcgtccattaatcgcgtcaaaccagcagagatt
gctgacgttctttattcacatatacctcagttctgtcgtcaggatgggagtcgtttcttg
cgtggaaagattggaagtcagcgggcctcagaacaacttgaccgacactttcgactgcag
cggcgggtacgtgagtcagggcagcgtgcgcaacagaggatgtggtctcaattacgatca
gaatggttagattcccacgatttcggcaccgctggaaatgggcagaactctcaggccgag
ggcagtcagcaaaataaaagaaaatcgatggaagacgaaaaatcggtaactgaactttcg
aagaagtcgatcatccgaccgagttcaccgggccttgctagccaaccgtgtccgatctgt
caagagtcattcgagactcgattcgatgaggatgagggtgaattctactggacgaatgcg
atcgagctgacgagagaggccggcaagcgagtggtctatcacgcgacttgtcattacgag
acgattcggaacaaagctcggatgaagatcaagtcggaactggaggagaaccgactgaag
agaatccaaatggaagccgatcggaagattaagattgagagtggaaacatagagcaagct
aatggagttgaacctgatcaggtgggagaggttggtaatacttgtaataatgataatcaa
tcagtcggctccactggtgatggtgataactgtctacttcagattgatgaaacatttcct
acagagagttcccactgtttgaaaaaacaaagaattaattccccccctgcaaaggcgcct
tcatga
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