Puccinia triticina (wheat leaf rust): PtA15_7A521
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Entry
PtA15_7A521 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03018
RNA degradation
ptrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PtA15_7A521
09123 Folding, sorting and degradation
03018 RNA degradation
PtA15_7A521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrc03019
]
PtA15_7A521
03041 Spliceosome [BR:
ptrc03041
]
PtA15_7A521
Messenger RNA biogenesis [BR:
ptrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PtA15_7A521
mRNA degradation factors
5'-3' decay
Lsm complex
PtA15_7A521
Spliceosome [BR:
ptrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PtA15_7A521
Complex C
U2 snRNP components
PtA15_7A521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF1256
DUF150_C
Motif
Other DBs
NCBI-GeneID:
77812031
NCBI-ProteinID:
XP_053022347
LinkDB
All DBs
Position
7A:complement(join(4688935..4688960,4689082..4689184,4689328..4689388,4689491..4689588,4689679..4689681))
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AA seq
96 aa
AA seq
DB search
MLIFSVFKTLTGQEVTIELKNDLAIQGTLASVDQFLNLKLENIKVLDQERHPHMMAVKNC
FIRGSVVRYVQIPKAAVDTQLLEDATRKEAANTAKR
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattctcagtcttcaagactctaaccggacaagaagtgacgattgaactcaag
aacgatttggccattcaaggcactttagctagcgtggatcaattcctcaacctcaaactt
gaaaatataaaagttctcgatcaagagcgacatcctcacatgatggcggtgaagaactgt
ttcattaggggctcggtggtcagatacgtccaaatcccaaaagctgccgtagacactcaa
ctactggaagacgcaacccgtaaagaagcagcgaatacagccaaacggtaa
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