Pseudomonas tremae: I9H09_01125
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Entry
I9H09_01125 CDS
T08237
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I9H09_01125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptre03019
]
I9H09_01125
03400 DNA repair and recombination proteins [BR:
ptre03400
]
I9H09_01125
Enzymes [BR:
ptre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I9H09_01125
Messenger RNA biogenesis [BR:
ptre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I9H09_01125
DNA repair and recombination proteins [BR:
ptre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I9H09_01125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UQB37052
LinkDB
All DBs
Position
263984..265918
Genome browser
AA seq
644 aa
AA seq
DB search
MHQRLEQVFGYTQFRPGQEAAISAVLARRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVS
PLLALIQDQLAFLHRHGISAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFR
NFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQTLLLTATATPQVIIDM
QDKFAIAPDDVVTTGFYRANLHLWVKPVSGRDKRRRLVEWLNERQGQPTIVYVTLQKTAE
HIAAHLEQNRLPASAYHAGLPNDQRESIQKRFMDGSLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIARVLEDLL
NARQDGQWEFLLGPLADLSNIRQLPLKTLLVQLELRGIIAPRYAYFAEYRFKFLLQPNDL
MARFEGERQQFVQALIDTSSRARTWATVNFDAMYQQYGAERARVVKALDYFQEKGWIELE
SKQMTEVYSLLRSDFDPQALSTELHDYFVHHEATEVARIHAMLDVFSSDQCLTHRLARYF
GDHKAPERCGHCSVCHGEVAHLPEPPALEPLPNRDFQQLCGGFIHKHQDYTGHPPSTECL
TRFLCGISVPLFTKLKARATAGFAVLEDYPYAQVRAWVQTTAES
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcgtcttgaacaggtttttgggtacacccagttccgaccggggcaggaggca
gccattagtgcagtgctggcgaggcgttcggcggcggccatctttccgactggctcaggc
aagtcgctatgttaccaattgcccgcgctgatgttgccgcatttgacgcttgtggtgtcg
cctttgctggcgcttattcaggatcaactggcctttttgcatcgtcacggcatttcggca
gcaagtatcgattcggcgcagagtcgtgatgatgtcgctgacgtgatggcaagggcgcgt
tccggggagctgaaaatcctgatgatttcggtcgagcgcctcaagaatgagcgcttccgg
aattttatcgctcaagtgccgatttccttgctggtggtcgacgaggcgcattgtatatcg
gaatgggggcataacttccggcccgactacctgaaactgccggactatcagcgcgaattc
aatatccctcagaccttgctgcttaccgcgactgccacgccgcaagtcattatcgatatg
caggacaaattcgccattgccccggacgacgtggtcaccaccggcttctaccgcgccaac
ctgcatttgtgggtcaagccagtcagcgggcgtgacaaaagacgacgtctggtcgaatgg
ctcaacgagcgacaggggcagcccaccattgtttacgtgaccctgcaaaagaccgctgag
cacatcgctgcacatcttgagcagaacaggctacccgccagcgcctaccatgccggattg
cccaacgatcagcgcgagtcgatccagaaacgcttcatggacggcagcctcaactgcatc
gtggccaccatcgcgttcgggatgggcatcgacaaaagcgacattcgcaacgtggtgcat
ttcgatctgcccaaatccatcgaaaactacagccaggaaatcggccgggcagggcgcgat
ggtgccgcgtccgattgtctggtgctggctaatcgcgacagcctcaacgtgctggaaaac
ttcgtgtatggcgacacgccagagcgtgagggtattgcgcgtgtgctggaggatctactc
aatgcgcgccaggacggccaatgggaatttctgctcgggccgctggcagatctcagcaac
attcgtcagttgccgctgaagacactgctggtacaacttgagctgcgcgggatcatcgca
ccgcgatacgcgtactttgcggaataccgtttcaagttcctgctacaacccaatgacctg
atggcgcgcttcgaaggggagcggcaacagttcgtgcaggcgctgatcgacacatccagc
agggcgcggacctgggccacggtgaactttgatgcgatgtatcagcaatacggcgccgag
cgcgcgcgtgtggtcaaggcattggactactttcaggaaaagggctggatcgagcttgaa
agcaaacagatgaccgaggtgtacagcctgctgcgcagcgatttcgatccgcaggcgctg
agcaccgagcttcacgactatttcgtccatcatgaagccaccgaagtggcgcgcattcac
gcaatgcttgatgtgttctccagcgatcagtgcctgacccatcgactggcccgctatttc
ggcgaccacaaggcacctgagcgctgtgggcattgttcggtctgccacggtgaagttgcc
cacctgcccgagccgccggcattggagccgttgccgaaccgtgattttcagcaactgtgc
ggaggttttatccacaagcaccaggattacactggccacccgccgagtactgaatgcctg
acgcgtttcctctgcggtatcagtgtgccgctgttcactaagctgaaagcccgcgcgacc
gcaggttttgccgtgctggaagattacccttatgcgcaggtaagggcgtgggtgcagacg
acggctgaaagctga
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