Pseudomonas tremae: I9H09_01980
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Entry
I9H09_01980 CDS
T08237
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ptre
Pseudomonas tremae
Pathway
ptre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I9H09_01980 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptre03021
]
I9H09_01980 (rho)
03019 Messenger RNA biogenesis [BR:
ptre03019
]
I9H09_01980 (rho)
Transcription machinery [BR:
ptre03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I9H09_01980 (rho)
Messenger RNA biogenesis [BR:
ptre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I9H09_01980 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
Fungal_virus_P2_C
NACHT
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UQB37204
LinkDB
All DBs
Position
448570..449829
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLEMAEQAGIENMARSRKQDVIFSLLKRHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTIRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgaattgctcgaaatggccgaacag
gctggcatagaaaatatggcccgttcgcgcaagcaggacgtcattttttccctgcttaaa
cggcacgccaaaagtggcgaggaaatatccggtgatggcgtgctggagattctccaggac
ggcttcggtttcctgcgctccgcagacgcttcctacctggccggcccggatgacatctac
gtctcccctagccagatccggcgcttcaacctgcgtaccggcgacactatcgttggcaag
atccgtccaccaaaagaaggtgagcgttatttcgctctgctcaaggtcgatacgatcaac
tacgatcgtccggaaaacgccaagaacaagattctgttcgaaaacctgacgccgttgttc
ccgacgatccgcatgaagatggaagccggcaacggttccaccgaagacctgaccggtcgt
gtgatcgatctgtgtgcaccgatcggcaaaggtcagcgtggtctgatcgttgctccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcgtcgaacatcacgcgtaacaacccg
gaagtgcatctgatcgtactgttgatcgatgagcgcccggaagaagtaaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcttcgacattcgacgaaccgccaacccgtcacgta
caggttgccgaaatggtgatcgagaaggccaaacgcctggtcgagcacaagaaagacgtc
gtcatcctgctcgactccatcacccgtctggctcgcgcctacaataccgtcatcccgagc
tccggcaaggtactgaccggtggtgtcgatgctcacgcactcgagaaaccaaagcgtttc
ttcggtgctgcgcgaaacatcgaagagggcggctcgttgaccatcatcgccaccgcgctg
gttgaaaccggttcgaagatggacgaagtcatctacgaagagttcaagggtaccggcaac
atggagctgcctctggatcgcaagatcgcagagaagcgcgtgttcccggccatcaacatc
aaccgctccggcacccgccgcgaagagctgttgaccgctgatgacgagttgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaagtcgcggcgatcgagttcctgatc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtccatgaaacgcaagtaa
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