Pseudomonas tremae: I9H09_03250
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Entry
I9H09_03250 CDS
T08237
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I9H09_03250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptre03021
]
I9H09_03250 (rpoC)
03400 DNA repair and recombination proteins [BR:
ptre03400
]
I9H09_03250 (rpoC)
Enzymes [BR:
ptre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I9H09_03250 (rpoC)
Transcription machinery [BR:
ptre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I9H09_03250 (rpoC)
DNA repair and recombination proteins [BR:
ptre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I9H09_03250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
BSH_YknX
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
UQB37421
LinkDB
All DBs
Position
721754..725953
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKERVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGLDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLGADDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREMDKPTR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgcaatc
cgtatcggacttgcatcgcctgagatgatccgctcttggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgatggtctgttctgcgccaag
atctttggcccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgtggtgtcatctgcgaaaaatgcggtgttgaagtggccttggccaaggttcgtcgtgag
cgcatggcccacatcgaactggcttcgccagttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccaccctcgaaaagggtcagctgctg
aacgacgagcagtatttcgaagcgctcgaagagttcggtgatgatttcgacgcccgtatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgatcttgagcacgaaatcggccgt
ctgcgtgaagaaattccgcaaaccaattccgagaccaagatcaagaagctgtccaagcgt
ctgaagctgatggaagcgttccagggttccggcaaccttcctgaatggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctctggttccgcttgacggtggtcgtttc
gcgacctccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctgtctgctcctgacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagcagtcgatgcactgctcgacaacggtcgtcgtggtcgtgcaatcaccggttcgaac
aagcgccctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcgggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggcctggccacgaccatcaaagctgccaagaaaatg
gttgagcgcgagctgccagaggtctgggacgttcttgctgaagtcattcgcgaacacccg
gtgcttctgaaccgtgcgcctacgcttcaccgtctgggcatccaggcatttgaaccggtt
ctgatcgaaggtaaggctattcagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggctgttcacgtgcctttgacgctggaagctcagctcgaagcg
cgcgcgctcatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtactgggtctgtattacatgactcgcgaagcgatcaacgcc
aagggcgaaggtcgtgtgtttgcggatctgcaggaggtcgaccgcgtattccgcgccggc
gaagcggctctgcacgccaaggtcaaggttcgtatccacgaaacggtcaacgaccgtgat
ggtggcagcgtcaagaacactcgtatcgtcgacactactgttggccgtgcgctgctgttc
caggtggttccggccggcctgtcctacgacgtcgtcaaccagcctatgaagaaaaaggcg
atctccaaactgatcaaccagtgctaccgcgtggttggtttgaaagagaccgttatcttc
gctgaccagttgatgtacaccggttttgcctactcgaccatttcgggtgtttccatcggc
gttaacgacttcgttatccctgatgagaaagctcgcatcatcgacgcggccaccgaagaa
gttaaagagatcgaaagccagtacgcatcgggcctggttactcagggcgagaagtacaac
aaggtaatcgacctttggtccaaggcgaacgacgaagtctcgaaagcgatgatgtcgaac
ctgtccaaagagcgtgttatcgatcgtcacggcgtcgaagttgatcaggaatccttcaac
tcgatgtacatgatggctgactccggcgcgcgtggttctgctgcccagattcgtcagctg
gccggtatgcgtggtttgatggccaagcctgatggctccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aaggggcttgcggatactgcactcaaaaccgctaactccggttatctgactcgccgtctg
gtagacgtggctcaggatctggtagttaccgaagtggattgcggtaccgagcatggcttg
ctgatgactccgcatattgaaggcggggacgttgtagagccgctgggtgaacgcgtattg
ggtcgagtgatcgcccgcgacgtattcaagccgggtaccgaagaagtcatcgtgcctgca
ggtacgttggtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgttcgctcgccaatcagctgtgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgtggtcaccaggtcaacattggtgaagctgtcggcgtaattgctgca
cagtccatcggtgagccgggtacacagctgacaatgcgtacgttccacattggtggtgcg
gcaagccggacttcggcagccgacagcgttcaggtcaagaatggcggtaccgtccgtctt
cacaacctgaagcacgtcgagcgtgtcgacggtcatctggtagcggtatcccgctctggt
gagctggcaatcgccgatgacttcggtcgcgagcgcgaacgttacaaactgccttacggt
gcagtgatttcggtgaaggaaggcgacaaggtcgacgctggttcgatcgtggccaagtgg
gatccgcacacccacccaatcgtcaccgagatgaaaggtactgttacctacgttggcatg
gaagagggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacatcgaa
gtgctcgacgcaaaagaccgcccggccgctggcaaggacattcgtcctgctgtgaagatg
gtaggtctggatggcaaggatctgctgctgccaggtactgacgtaccggctcagtacttc
ctgccggctaacgccctggttggtgtagctgacggtgcgcagatcgcgatcggtgatgtt
atcgctcgtattccgcaagagacttcgaagacacgtgacatcaccggtggtctgccgcgt
gttgccgaccttttcgaagcacgtcgtccgaaagaggcgtcgatccttgcagaagtcagc
ggtaccatcgcattcggtaaagagaccaaaggcaagcgtcgtctggtcattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtcctagcgatccacacgatatc
ctgcgtttgctgggtgtcagtgcgctggccaagtacatcgtcaacgagattcaagacgta
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccattctgcgtcagatg
ttgcgtaaagttgagattgccgaatccggcgattccagtttcatcaagggcgaccagatg
gaattgactcacgtcctggtagaaaacgagcgtttgggcgcagacgacaagtttgtttcc
aaattcactcgcgtgttgctgggtatcaccaaggcatcgttgtccaccgagtcgttcatc
tccgcggcctccttccaggagacaacccgtgtactgaccgaagcggctgtgacaggcaag
cgcgactacctgcgtggcctgaaagaaaacgtggttgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgtcgtcgtgaaatggacaaaccgacccga
gtcagtgcaagtgaagttgaagctgccctgacggaagcgttgaactccagcggtaactaa
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integrated database retrieval system
