Pseudomonas tremae: I9H09_06670
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Entry
I9H09_06670 CDS
T08237
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre03030
DNA replication
ptre03430
Mismatch repair
ptre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I9H09_06670 (dnaE)
03430 Mismatch repair
I9H09_06670 (dnaE)
03440 Homologous recombination
I9H09_06670 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptre03032
]
I9H09_06670 (dnaE)
03400 DNA repair and recombination proteins [BR:
ptre03400
]
I9H09_06670 (dnaE)
Enzymes [BR:
ptre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I9H09_06670 (dnaE)
DNA replication proteins [BR:
ptre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I9H09_06670 (dnaE)
DNA repair and recombination proteins [BR:
ptre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I9H09_06670 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UQB38041
LinkDB
All DBs
Position
1456952..1460473
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG
IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV
AQASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRTNDEEH
LHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQYLK
SPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLDIAFIPLDDMPTYQ
LLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIDGCKTNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAI
KGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEP
KAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADADVYANHRKTRE
SSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGLIIALRVM
KNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAIVVVEGEVSNDDFSGGLRLR
AKRVMSIEDARTNLAESLRVTVHADALKGERLRWFGDLCKRHRGACPITVDYTGKDAKAL
LQLGEAWRIDPADSLIQALRDQFGRENVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcttttgttcatctacgcctgcacaccgagtattcgctggtcgacggtctg
gtccgggtcaaaccgttgatcaaggcgctgaccggcatgaacatgcctgccgtggcagtg
actgatcagaacaacatgtgttcgctggtcaaattctacaaggccgcccaaggctccggg
atcaagccgatctgtggtgtcgacctgtggctggcgggcagggatgaggacgctgcgctc
agtcgtatcagcctgctggcaatgaatgctcaaggctaccgcaacctgaccgaactgatc
tcacgcggcttcatcgagggccagcgcaacggtcagatcgtcatccagcgccagtgggtc
gcgcaggccagcgaaggcgttattgcgctttccgcggccaaggaaggcgaaatcggcatg
gcattgctgggcggcaacccaggcgaggcagacgagctgctgcgcgaatggctggaagta
tttcctgatcgcttctatatagaggtgcaacgcaccaaccgcaccaacgacgaagaacat
ttgcacgccgcagtggcgctggccgagcgccacggtgcgccgctggtcgcgaccaacgat
gtgcgctttatcaaacagaccgattttgaggctcacgagactcgcgtgtgcatcggcgaa
ggccgggcgctggacgacccgcgtcgctctcacaattacagcgatcagcagtacctgaaa
agtccggaagaaatggccgagctgttcagtgatttgcctgaggcgctggaaaataccgtc
gagattgccaagcgctgcaacatcgacgtcaagctgggcacccacttcttgcccaacttc
ccgattcccgatggcatgaccatcgacgagtacttccgcaaagtctcgttcgacggtctt
gaagagcgtcttgctgtcctgttgcccaaggacaccaccgaagattacgaagccaggcgc
caggtgtatgtcgaccggctgaatttcgagctggacatcatcatccagatgggcttcccc
ggttacttcctcatcgttatggacttcatccagtgggccaagagcaacggcgtaccggta
ggtccgggtcggggttcgggtgccggctcgctggtcgcctatgtacagaagatcaccgat
ctcgatccgctggaatatgacctgctgttcgaacgcttcctgaacccggagcgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggtcgtgatcgggttattgaatatgtg
gccgagaaatacggccgcaatgcagtcagtcagatcatcaccttcggttccatggcggcc
aaggcggtggtgcgtgacgttgcgcgggtacagggcaagtcttacgggttggctgatcga
ctgtcgaagatgatcccgttcgaagtcggcatgaccctagaaaaggcttacgagcaggaa
gaaatcctccgcgatttcctcaaggtagacgaggaagccgctgaaatatgggaaatggcc
ctcaagcttgaaggcatcgtgcgtaacgtgggcaagcacgctggtggtgtggttatcgcc
cccaccaagctgacggacttctcgccgatctattgcgacgaagccggcgacggtctggtg
acccagttcgacaaggacgatgtcgaggccgcagggctggtgaagttcgacttcctcggt
ttgcgaaccctgacgatcatcgactgggcgctgaagaccatcaaccgcgaccgcgccaag
gtcaacgaagcgcctctggacatcgcgttcattccgctcgatgacatgccgacttaccag
ttgctgcaacgggctgaaaccacggcggtcttccagctcgagtcgcgcggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggcgttattc
cgtcccggccctttgcagtcgggcatggtagacgacttcatcaaccgcaagcacggccgt
gcagagctgtcttatccgcacgtcgattaccagtatgagggcctcaagcccgtgctggca
cctacttacggcatcattctgtatcaggaacaggtgatgcagatcgcacaggtcatggcc
ggttacaccctcggcggtgcggacatgctgcggcgagcgatgggcaagaaaaagcccgag
gaaatggccaagcagcggggcggtttcattgatggctgcaagaccaacaatatcgacgcg
gatctggccggtaacattttcgacctggttgagaaattcgcgggctacggcttcaacaaa
tcccactcggcggcctatgggctggtgtcgtatcagactgcctggctgaagactcactac
cctgcgccgttcatggcggcggttttatcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcgcaccatgaaactgcgccttgacgcgccggacgtgaacacc
tccgaattcaagttcactgtaagcgacgacggccgcattctgtatggcctcggcgctatc
aagggcgtgggcgagggcccggtcgaggccattaccgatgcgcgccagaacgggccgttc
aaggatctgttcgatttctgcgcgcgcgttgacctcaaacgggtcaacaagagaacgctc
gacggcctgattcgcagtggtgcgctggatcgcctcggcccgtacttcgaattggaaccc
aaggcgtatcaagccaatatcgaccgtaaccgttcggtgttgctggcagcgctggaagag
gccattcaggctgccgagcagaccgcccgcagccgcgacagtggccactcggacctgttt
ggcggcctgtttgtcgaggcggatgccgacgtatacgccaaccatcgcaagacccgcgag
tcgagcctcaaggatcgtctgcggggtgaaaaggaaaccctggggctgtacctgaccggg
catcccatcgacgaatatgaaggcgagattcgccgcttcgcccgtcagcggatcattgac
ctgaaaccggccagagacacccagacggtcgcgggtctgatcattgccttgcgcgtgatg
aagaacaagaagggcgacaagatggggttcatcaccctggatgaccgctcggcacgcatc
gaagcgtcgctgtttgccgaagcgtttcattcggcccagtcactgttgcagaccgatgct
attgttgtggtcgaaggagaagtgagcaacgatgatttctctggagggctgcgactgcgc
gccaaacgtgtgatgagtatcgaggatgcacgtaccaacctggccgaaagccttcgcgtg
acggtacacgccgacgcgctcaagggtgaacggctgcgctggttcggtgatctttgcaag
cgccatcgaggtgcctgcccgatcactgtggattacaccgggaaggacgccaaagcactg
ctgcaattgggagaagcgtggcgtattgatcctgcggacagcttgattcaagctctgcgt
gaccagttcgggcgtgagaacgtctttctccagtatcgttga
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