Pseudomonas tremae: I9H09_10260
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Entry
I9H09_10260 CDS
T08237
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre00071
Fatty acid degradation
ptre00280
Valine, leucine and isoleucine degradation
ptre00310
Lysine degradation
ptre00362
Benzoate degradation
ptre00380
Tryptophan metabolism
ptre00410
beta-Alanine metabolism
ptre00640
Propanoate metabolism
ptre00650
Butanoate metabolism
ptre00907
Pinene, camphor and geraniol degradation
ptre00930
Caprolactam degradation
ptre01100
Metabolic pathways
ptre01110
Biosynthesis of secondary metabolites
ptre01120
Microbial metabolism in diverse environments
ptre01200
Carbon metabolism
ptre01212
Fatty acid metabolism
Module
ptre_M00087
beta-Oxidation
ptre_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
I9H09_10260 (fadB)
00650 Butanoate metabolism
I9H09_10260 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
I9H09_10260 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
I9H09_10260 (fadB)
00310 Lysine degradation
I9H09_10260 (fadB)
00380 Tryptophan metabolism
I9H09_10260 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
I9H09_10260 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
I9H09_10260 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
I9H09_10260 (fadB)
00930 Caprolactam degradation
I9H09_10260 (fadB)
Enzymes [BR:
ptre01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
I9H09_10260 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
I9H09_10260 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
I9H09_10260 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
I9H09_10260 (fadB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
UQB38691
LinkDB
All DBs
Position
2242705..2244870
Genome browser
AA seq
721 aa
AA seq
DB search
MIYEGKAITVKALESGIVELNFDLKGESVNKFNRLTLNELRHAVDAIKADASVKGVIVTS
GKDSFIVGADITEFVENFKLPEAELVAGNLEANRIFSDFEDLGVPTVVAINGIALGGGLE
MCLAADFRVMSSSARIGLPEVKLGLYPGFGGTVRLPRIVGADNAIEWIASGKENAAEDAL
KVGAVDAVVAPEKLQAAALDLIQRAISGEFDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKMAKTSAAHSLIGLFLNDQEL
KKKAKGYDKVARDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIREEAIQLGLNEASKL
LGGRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVEANVG
ENTILASNTSTISISLLAQALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEEAVATTVA
YARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEANRLGQKNGKGFYAYEADKKGKP
KKVNDPAVLDVLKPIVYEQREVSDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLIY
GIGFPPFRGGALRYIDSIGVAEFVALADRYAELGALYQPTAKLREMALNGQSFFGQASSE
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgaattg
aatttcgacctcaagggtgagtccgtcaacaagttcaaccgcctcaccctcaatgaattg
cgccacgcggtcgatgccatcaaggcagatgcatcggtcaagggcgtgattgtcaccagc
ggcaaggattcgttcattgtcggtgccgacatcaccgagttcgtcgagaacttcaagttg
ccggaagccgaactggttgccggcaatctggaagccaacagaatcttcagcgatttcgaa
gacctgggcgtacctaccgtcgtagccatcaatggcatcgcgctgggcggtggtctggaa
atgtgtctggccgccgatttccgtgtcatgtccagcagcgcccgcattggcctgccagaa
gtcaaactgggtctgtatccgggcttcggtggcaccgttcgcctgccgcgcatcgtcggc
gccgataacgcgatcgagtggattgcatcgggcaaggaaaacgcagcagaagacgctctg
aaagtcggtgctgtcgatgctgtcgtggcaccggagaagcttcaggcggccgcacttgac
ctcatccagcgcgccatttccggcgagttcgattacaaggccaaacgccagcccaaactg
gaaaagctcaaactgaatgccatcgagcagatgatggctttcgaaacggccaaaggcttc
gtcgcgggtcaggccggtcctaattacccggcccctgtagaagccatcaagaccattcag
aaagccgccaatttcggtcgcgacaaagcgctggaagtcgaagctgccggcttcgtcaag
atggccaagacctcggcagctcacagcctgatcggtcttttcctgaacgatcaggagctg
aaaaagaaagccaagggctacgataaggttgcccgtgacgtgaaacaggctgcggtactg
ggcgctggcatcatgggcggtggcattgcctatcagtcagcggtcaaaggtacgccgatc
ctgatgaaggacatccgtgaagaggccattcaactgggcttgaacgaagcgtccaagctg
ctgggcggtcgccttgaaaaaggccgtctcacggcagcgaagatggccgaagcgctgaat
gcgatccgtcctacactgtcgtatggcgatttcggcaatgtcgatctggtggtcgaagcg
gtagtcgaaaaccccaaggtcaaacaggccgtgctggctgaagttgaagccaatgtgggc
gagaacaccattctggcgtccaacacttctaccatttcgatcagcctgctggcccaggcg
ctcaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccc
ctggtggaagtcattcgtggcgagaagtccagcgaggaggcagttgctaccactgttgct
tatgcccggaaaatgggcaagaacccgatcgtggtcaacgactgcccgggctttctggtt
aatcgtgtgttgttcccttatttcggtggtttcgccaggctggtcagcgcgggtgtggat
ttcgtgcgcatcgacaaggtcatggagaagttcggctggccgatggggcctgcctatctg
atggacgtggtcggtatcgacaccgggcatcacggtcgagacgttatggccgaaggcttt
ccggaccgtatgaaggatgaccgtcgctctgccatcgacgcgctttacgaggccaatcgt
ctgggccagaagaacggcaagggcttctatgcctacgaggcggacaagaagggcaagccg
aagaaggtcaacgacccggccgtgcttgatgtgctcaagccgattgtctacgagcagcgt
gaagtgagcgacgaagacatcatcaactggatgatgatcccgctttgcctggaaacggtc
cgttgcctggaagacggcatcgtcgaaaccgccgccgaagccgatatgggtctgatctac
ggtattggtttccctccgttccgcgggggtgcgctgcgctacatcgactctatcggtgtg
gccgaattcgttgccctggccgaccgatatgccgagctgggtgccctgtatcaaccgacc
gcgaagcttcgtgagatggcccttaatggccagagcttctttggtcaagcgtcttccgag
gaatga
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