KEGG   Pseudomonas tremae: I9H09_13930
Entry
I9H09_13930       CDS       T08237                                 
Name
(GenBank) sigma 54-interacting transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
ptre  Pseudomonas tremae
Brite
KEGG Orthology (KO) [BR:ptre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ptre03000]
    I9H09_13930
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ptre02044]
    I9H09_13930
Transcription factors [BR:ptre03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    I9H09_13930
Secretion system [BR:ptre02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   I9H09_13930
SSDB
Motif
Pfam: Sigma54_activat AAA_lid_14 Sigma54_activ_2 HTH_8 AAA_5 HTH_30 GAF AAA_16 HTH_50 AAA_2 AAA_7 AAA TsaE BRX
Other DBs
NCBI-ProteinID: UQB39341
LinkDB
Position
complement(3079641..3081170)
AA seq 509 aa
MASTFHALPDPLSYAQKLLSYYSSLSLSGDKRSLLHDFVRFAAELSGCEAAQLFMQSPTQ
KRLSLTAEIMDGVIQPDTAKASANNWSDQPLLQLSLQKNKVVSLQEISASLNDVRFLPVR
AESWKSLLCIPLPGREKDPVGLLICVSSCRRELECYAESLGALGAFVISQLLLLEPLNNT
AGAPPSPTVRPPQAAHYGLTGNSAALKRTTRLLGKVLDSSCTVLLTGETGTGKEIVSRAI
HEHGPRRSNAFVVQNCAAFPEALLESELFGYRKGAFTGADRDRRGLFDAAHGGTLLLDEI
GDMPMLLQAKLLRVLQEGEIRPLGSNEVRKVDVRIIAATHRDLPKLIAEGRFREDLYYRL
AQFPVELPPLRQRIEDIELLARHFSDAVCQRSQRSAVQWSKAALDVLSGYAFPGNVRELK
GFVERALLLCEDDELRPEHFPIATDAISCPAAFTLRERIEQFERGVLLECLRDSDGNRSL
AARTLGVSRRTLLYRLAHLKLGAAHGGTG
NT seq 1530 nt   +upstreamnt  +downstreamnt
gtggcctcgactttccatgcgctacctgatccgctgagctacgcgcaaaaactattatcg
tattactcaagcctttcgctttcaggcgacaaacgatcgttactgcatgatttcgtccgg
ttcgccgccgagttgagtggttgtgaggcagctcagttatttatgcagagtcctactcag
aaacgtctcagcctcactgcagaaataatggatggcgtcattcagcccgatacagcaaag
gcgtcagcaaataactggagcgatcagccactgctgcagctaagtctccagaaaaacaag
gttgtcagccttcaggaaatcagcgccagcttgaatgacgttcgttttctgcctgttcga
gccgagagttggaaatcgctgttatgcatcccgttgcctgggcgcgaaaaagatcctgtg
gggttgctgatctgtgtgagcagttgccgtagggagctggaatgctacgcagaatcgcta
ggcgcactgggagcatttgtcatttcacaattgctgcttctggaacctttgaacaatacc
gcaggcgcgccacctagtccgacggtacgcccacctcaggcagcgcactacgggttgacg
ggaaacagcgctgcgctgaaacgcacaactcgtcttctgggtaaagtcctcgacagttcg
tgcaccgtattgcttaccggagagacaggcacaggcaaggaaattgtatcgcgtgcgata
catgaacatggcccgcggcgctcgaacgctttcgttgtgcaaaattgtgctgcatttccg
gaagcgcttctggaaagcgagctgtttggctatcgcaagggcgcttttaccggagcggat
cgagatcggcgcggcctgtttgatgctgcgcacggaggtacgcttctgctcgatgaaatc
ggtgacatgcccatgctgctacaggccaagcttctgcgggtattgcaggaaggggagatt
cggccactgggttccaacgaggttcgcaaagttgatgtgcgaatcattgcggcgactcat
cgagatctcccgaagttgattgcagaggggcgctttcgtgaagatctttattaccggttg
gcgcagtttcccgttgagctgcctccgttgcgtcaacgcatagaggacattgaactactg
gccaggcatttttccgacgcggtttgccagcgctcacaacgtagcgctgtgcaatggtcg
aaagccgcactggacgttttgtctggctacgccttcccgggcaacgttcgtgaactgaaa
gggtttgtcgagcgcgcgctgttgctgtgcgaggacgatgagttaaggccagagcacttt
cctattgccaccgatgccatcagttgtcccgcggccttcacgttgcgtgaacgtatcgag
caattcgagcgtggtgttttgcttgagtgtctgcgcgacagcgacggcaatcgaagtctt
gctgcacgtacgttgggagtgtcgcggcgcacgctgctgtatcgcctggctcacctgaaa
ctaggtgctgctcatggcgggactggttaa

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