Pseudomonas tremae: I9H09_19515
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Entry
I9H09_19515 CDS
T08237
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ptre
Pseudomonas tremae
Pathway
ptre02020
Two-component system
ptre02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
I9H09_19515
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I9H09_19515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptre03021
]
I9H09_19515
Transcription machinery [BR:
ptre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I9H09_19515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
UQB35710
LinkDB
All DBs
Position
4330751..4332244
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSD
PLADNIEQKPNPDVQEPTYQESAPTVDNLEDGEWSERIPNELPVDTAWEDVYQTSASSLP
SNDDDEWDFTTRTSVGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLEEI
LESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLTEAQRLV
TDYIDLLGSRDYGQLMRRMKLKEDELRQVIELIQSLNPRPGSQIESTEAEYVIPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggcaatccgcttacttcagctttccactctggacctccagcaggagattcaagaggcg
ctggagtcaaaccctatgcttgagcggcaggaagaaggcgacgacttcgacaactccgac
ccgcttgccgacaacatcgaacaaaagcccaacccagatgttcaagaacccacctatcag
gaatccgcgcctaccgtggacaacctggaggacggcgagtggagcgagcgcatcccgaac
gaattgccggtcgatacggcatgggaagacgtttaccagaccagtgccagcagcttgcca
agcaatgacgatgacgagtgggacttcaccacccggacctcggtaggcgaaagcctgcaa
agccacctgctatggcaactgaacgttgcgccgatgtcagacaaggaccgcctggtagcc
gttacgctgatcgactgcattaacaaccagggttatctggacgagacactcgaagaaatc
ctcgagtccttcgatcctgagctggatatcgaactcgacgaaatagaagccgttctgcat
cgcatccagcagttcgagccggcaggcataggggcgcgcaacctgagcgaatgcctgctg
ctgcagctgcgccagcttccggccaaaaccccgtggctgaccgaagcgcaacgtctggtt
accgactacatcgacctgctcgggagccgcgactacgggcagttgatgcgccgcatgaag
ctcaaggaagatgaactgcgtcaggtcatcgaattgatccagagcctcaatccacgccct
ggttcgcaaatcgagtctacggaagccgaatacgtcattcccgatgtaatcgtgcgaaaa
gacaacgagcgctggctggtcgaactcaatcaggaatccgtaccgcgcctgcgcgtcaac
ccgcaatacgccggcttcgtgcgtcgcgccgataccagcgccgacaacaccttcatgcgc
aaccagttgcaggaagcccgctggttcatcaagagcctgcaaagccgcaacgaaaccctg
atgaaagtggccacccagatcgtcgagcatcagcgaggctttctcgagtacggcgacgag
gccatgaaaccgctggtcctgcatgacattgccgaggcagtgggcatgcacgagtcgacc
atctcgcgggtgacgacgcaaaagttcatgcacaccccacgcggtatttacgagctgaaa
tacttcttctcgagccatgtgagcacctccgaaggcggcgaatgctcgtctacggcgatc
cgcgcgatcatcaaaaaactggtcgctgcggaaaatcagaaaaagccgttgagtgatagc
aagatcgctggtttactggaggcacaaggcattcaagtagcccgtcgcacagtcgccaaa
taccgcgagtcactcgggatagcgccttccagtgagcgtaagcgattgatgtga
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