Candidatus Paraimprobicoccus trichonymphae: RsTaC01_0767
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Entry
RsTaC01_0767 CDS
T09783
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptrh
Candidatus Paraimprobicoccus trichonymphae
Pathway
ptrh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptrh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RsTaC01_0767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrh03021
]
RsTaC01_0767
03400 DNA repair and recombination proteins [BR:
ptrh03400
]
RsTaC01_0767
Enzymes [BR:
ptrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RsTaC01_0767
Transcription machinery [BR:
ptrh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RsTaC01_0767
DNA repair and recombination proteins [BR:
ptrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RsTaC01_0767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BED92870
UniProt:
A0AA48ICB5
LinkDB
All DBs
Position
860063..863560
Genome browser
AA seq
1165 aa
AA seq
DB search
MAIKFNIFNSMKIGLASSDRIKEWSYGEVKKPETINYRSLKPEPDGLFCEKIFGPQKDWE
CHCGKYKRMRYRGKICDRCGVEVTKSKVRRERMGHIGLATPVSHIWYFKGIPSRMALLLD
ISPRMLEKVLYFACYIVIDPGNVREIDKCQFLSEQEYRDLREKYENDFKAGMGAEAVRTL
LTSLDLESISVEIKKELMIASGQKKVRLLKRLEAVDAFKISNNKPEWMILEVLPVIPPDL
RPMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLSAPDIIVRNEKRMLQEAVDALLDN
GRRGKAVTGANSRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLP
KEMALELFKPFVMRRLVETGTISNIKTARKAIERAHDEVWDALDIVIKDHPVLLNRAPTL
HRLGIQAFEPILVEGRAIKLHPLVCTAFNADFDGDQMAVHVPLSAEAQSEARFLMFAPGN
LLKPSDGRAVVVPTQDMVLGIYYLTMKKENQLGENKVFKDFDEALLAYESKIISLHAKIK
VRKKVNFKNEFLSKIIETTAGRIIFNSKLPQDLGFKDRTKVENVFDLEIDFLVGKKQLGQ
IVDRCIKKHGTLKTSKILDEIKTLGFKYSTKGAITVSVNDAVIPKEKKKIIANSEKEIDK
VLNFYKKGLLSDYEKKTLVLKVWERATNSVTNALNNILDKNNPIFMMADSGARGSMSQIR
QLSGMRGLIADTSGTTIEVPIKSNYREGLNILEYFISSRGARKGSSDTALRTADSGYLTR
RLVDVSQDIIIRKDDCGTIKGLTVFEIKEGKESVESFNERLIGRYLCHDFTDENGEVLVS
KEKLLDSEDTDIIIGKNVKKIEIRSVLNCKCEHGVCKKCYGANLANGKPTSIGEAVGIIA
AQSIGEPGTQLTMRNFHTGGIASAEDITQGLPRVEELFEARKPKRLAIISEISGKVEFEE
IKKNRYAKIVNEATGEQKSYLIPFGLTLNVDEDQEVEVGDLLTEGSVNPHDVLLVKGPEA
VVNYLVKEVQRVYRLQGVDINDKHIEVIVRQMLKKVRINSAGDTNLLQNSIVDRTELEIE
NGKIGEDQEKANYTSILLGITKASLATDSFLSAASFQETTRVLTDAAIKSKMDLLSGLKE
NVIIGKLLPAGTGIHEYSDIIIESN
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggctataaaatttaatatttttaattctatgaaaattggtttagcttcttcggataga
ataaaggagtggtcatacggagaagtaaaaaagcctgagactataaattacagaagttta
aaacctgaaccggatggtttattttgtgaaaaaatttttggcccgcaaaaagattgggaa
tgtcactgcggaaaatataaaagaatgcgatatagagggaagatatgcgacagatgtgga
gttgaagttactaaatctaaagtcagaagggaacgtatggggcatataggattagctact
cctgtttctcatatttggtattttaaaggtattccttcaagaatggctttgttgttagat
atttcacccagaatgttagaaaaagttttgtatttcgcttgttatatagtgattgatcca
ggtaatgtaagagaaatagacaagtgtcaatttttgtctgaacaagaatatagagattta
agagaaaaatatgaaaatgattttaaagcaggaatgggtgcagaagcagtaagaacttta
cttactagtttggatttagagagcatatctgtagaaataaaaaaggaattaatgatagct
tcaggacaaaaaaaagttagattgttaaaaagattagaagcagtagatgcttttaaaatt
tcaaataacaagccggaatggatgattttggaagtattacctgttattccaccagattta
agacccatggtacaacttgatggtggaagatttgcaacttctgatttaaatgatttatat
agaagagtaataaacagaaataatagattaaaaaaattgttagatttaagtgctcctgat
attatagttaggaatgaaaaaagaatgttacaagaagcagtagatgctttgttagataac
ggtagacgcggaaaagctgtaactggtgcaaatagtagacctttaaagtctctttctgat
atgttaaaaggaaaacaaggtagatttagacaaaatttattgggaaaaagagtagattac
tctggccgttcagttattgttgtaggtcccgaattgaaaatttatcaatgcggattgcct
aaagaaatggctttagagttattcaaaccgtttgtaatgagaagactagtagaaacagga
actatttctaatataaaaacagcaagaaaagctatagaaagagctcatgacgaagtttgg
gatgctttagatatagtaataaaagaccacccagttttgttaaatagagcgcctactttg
catagattaggaattcaagcttttgagccaatattggtagaaggaagagcaataaaattg
cacccgctagtttgtactgcttttaatgctgattttgacggagatcaaatggctgtgcat
gttccattatctgcagaagcccagtctgaagctaggtttttaatgttcgcgcctggtaat
ttacttaaaccatcagacggaagagcagttgttgtccctacccaagatatggttttggga
atttattatttaactatgaaaaaagaaaatcagttgggtgaaaataaagtttttaaagat
tttgatgaggctttattagcttacgaatctaaaataatcagtcttcatgctaaaataaaa
gtaagaaaaaaagttaatttcaaaaatgaatttttgagtaaaataatagaaaccacagct
ggacgaattatatttaattctaagttgccacaagatttaggttttaaagatagaactaaa
gtagaaaatgtatttgatttagaaatagattttttagtaggtaaaaaacaacttggtcaa
atcgtagacagatgtataaagaaacatggtactttaaaaacttctaaaatactggatgaa
attaaaactttaggatttaaatattctacaaaaggtgcaattactgtgtctgtcaatgat
gctgtgataccgaaagaaaagaaaaaaataatagctaactctgaaaaagaaatagacaaa
gttttaaatttttataaaaagggtttgttatcagattatgagaaaaaaacgcttgtttta
aaagtctgggaaagagctactaatagtgtgacaaacgctttaaataatattctagataaa
aataatccaatttttatgatggcagattcaggtgctcggggttctatgagccaaatcaga
caactttcgggtatgagaggtttaatagcagatacttcgggaactacaattgaagttcct
atcaaatcaaattacagagaaggtttaaatatactagaatattttatttcttctcgtggt
gctagaaagggttcttctgatacggctcttagaactgcagactctggttatttaactcgt
agattagtagacgtgtctcaagacataattataagaaaagacgattgtggtactattaag
ggactaactgtttttgaaattaaagaaggtaaagaatccgtagaatcttttaatgaaaga
ttaataggaagatacttgtgccatgattttacagatgaaaacggagaggttttggtttct
aaagaaaaattattagacagtgaagacactgatataataataggtaaaaacgtgaaaaaa
attgaaattagatctgttttaaattgtaagtgtgaacacggagtctgtaaaaaatgttat
ggtgctaacttggctaacggaaaacctacttctatcggtgaagcagttggaattattgcc
gcacaatcgattggcgagcctggtacacagcttactatgaggaattttcataccggtggt
attgcaagtgctgaagatataactcaaggcttgcctagagttgaagaattatttgaagca
agaaaacccaaaagattagctatcattagtgaaatttctggtaaagttgaatttgaagaa
atcaaaaaaaatagatatgcaaaaattgtaaatgaagcaacaggagaacaaaaatcatat
ttgattccttttggattgactttaaatgtcgatgaagatcaagaagttgaagttggagat
ttattaacagaaggttcggttaatccgcatgatgttttgttagtaaaaggtcctgaagca
gttgttaattacctagtaaaagaagttcaacgtgtttatagacttcaaggtgttgacata
aatgataaacatatagaagttatagtaagacaaatgctcaaaaaagtcagaataaacagc
gccggagatactaatttacttcaaaattcaatagtagatagaacagaactagaaattgaa
aatggtaaaattggtgaagatcaagaaaaagcaaattatacctctatattattaggaata
acaaaggcttctttagctacagattcatttttatctgcggcgtcttttcaagaaacaaca
agagttttaacagatgcagctataaaaagtaaaatggatttgctttctggattaaaagaa
aatgtaataataggaaaattattgccagctggaacaggaattcatgaatatagcgatata
attatagaatcaaattaa
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