Candidatus Paraimprobicoccus trichonymphae: RsTaC01_1068
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Entry
RsTaC01_1068 CDS
T09783
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ptrh
Candidatus Paraimprobicoccus trichonymphae
Pathway
ptrh03420
Nucleotide excision repair
ptrh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RsTaC01_1068
03430 Mismatch repair
RsTaC01_1068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptrh03400
]
RsTaC01_1068
Enzymes [BR:
ptrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RsTaC01_1068
DNA repair and recombination proteins [BR:
ptrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RsTaC01_1068
MMR (mismatch excision repair)
Other MMR factors
RsTaC01_1068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
TYW2_N_arc
Motif
Other DBs
NCBI-ProteinID:
BED93107
UniProt:
A0AA48I3K0
LinkDB
All DBs
Position
1201150..1203513
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AA seq
787 aa
AA seq
DB search
MFNIKGPLIILAGAGSGKTTVIINRIFYMVNYGDAYSGKESSNDITKEMIEKFKESEECL
DEYLKSKITVKPWNILAITFTNKAANELKERLSKKLGENSQSIWASTFHSMCVRILRLHA
DKIGYTQGFTIYDSEDSKKLVRDCCKIIKVDDKLLPYKTVMGEISRAKNELKSVIEFKIF
VHNDFRMSKISEVYGLYQKTLEESDGMDFDDLINNTVKLFENYPDILETYQSKFKYILVD
EYQDTNHSQDYLVNLLAKRHNNLCVVGDDDQSIYKFRGATIDNMLNFDKKYRNTSIIKLE
QNYRSTKNILSAANTLIGYNIHRKIKKLWTEKEIGAKIRIHTAFNEYEEANFIADMMKKY
IEEGGNAYSDFAVLYRMNSQSNVLERVFVKNNIPYRMLGGVRFYERKEIKDIIAYLSVIN
NPSDSVRLRRIINIPKRAIGDRVVNLAVEVAIEKNLSLLEVLAKAEDYDCLKKSSTKVEG
FVSLIKNLINIKKSGKLKLSKLYESILNDTEYIKYLESYGDDPRARVENVKELSSNIIKY
EEENGEEANLSGFLEEVSLLSDTDNYNENVDAVSMMTMHAAKGLEFKNVFLPGFEEGIFP
RFQAIYKPEDIEEERRLAYVAITRAKENLYILNSNSRMIFGCTSNYKPSRFIKELSSELV
EKTKSKDWKKLNPEEDEPRSAYELQLKSTISARKFNKITGGITTEPGNNFRNNLEFGVGD
KVKHALFGEGEVVDILDSNGTILVIDFLKVGIKKLAPQFLSKLSLDSNSSLSAQKNRDFC
ARLVRKY
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaatataaaaggtccattaataatattggctggtgctggaagtggcaaaactact
gttattataaatagaattttttatatggtaaattatggcgatgcatatagcggaaaagaa
agtagcaatgatataactaaagaaatgattgaaaaatttaaagagtctgaggaatgtcta
gatgagtacttaaagtctaagattacagttaaaccttggaacatccttgctatcactttt
actaataaagcagctaacgaattgaaagagaggttatctaaaaaattgggtgaaaatagt
caaagtatttgggcttcaacttttcactcaatgtgtgtaagaattttaagattacatgct
gataaaataggatatactcagggatttaccatatatgactctgaagactctaaaaaattg
gttagagattgttgtaaaattataaaagtagatgataagctattaccatataaaacggta
atgggagaaatttctagagctaaaaatgaattaaagagtgtaatagaatttaaaattttc
gtccataatgattttagaatgtcaaaaatttcagaagtttatggtttatatcaaaaaaca
cttgaagaatctgatggaatggattttgacgatttaataaataatactgtaaaactattt
gaaaattatccggatattttagaaacttatcaaagtaagtttaagtatattttagtagat
gaatatcaagatactaatcattcacaagattatttagttaatttattagctaaaagacat
aacaatttatgtgtagttggggatgatgatcaaagtatttacaagtttcgcggtgctact
attgataatatgttaaattttgacaaaaaatatagaaatacttcgattataaagcttgaa
caaaattatagatctacaaagaatattttaagtgctgctaatactttaattggttacaat
attcacagaaaaataaaaaaattgtggactgaaaaagagataggggcaaaaataagaatt
catactgctttcaatgaatatgaagaagcaaattttattgccgatatgatgaaaaaatat
attgaagaaggtggaaatgcttactctgatttcgcagttttatatagaatgaattctcag
tcaaatgttttagaaagagtttttgtgaaaaataatattccttacagaatgctaggcggt
gtcagattctatgaaagaaaagaaataaaagacataatagcttatttaagtgtgattaat
aatccaagtgattctgttagactaaggaggattataaacatacctaaaagagcgattgga
gatagagttgtaaatttggctgttgaagtagctatagaaaaaaatttaagtttgttggaa
gtactagcaaaagcagaagattatgattgtttaaaaaaatcatccacaaaggttgaaggt
tttgttagcttaattaagaatttaataaacattaaaaaaagcggtaaattaaagttgagt
aaattatacgaatctattttgaacgatacagaatatattaagtatcttgaaagctatgga
gacgacccaagggctagagttgaaaatgtaaaagaattatctagtaatataataaaatac
gaagaagaaaacggtgaagaagccaacttatctgggtttttagaagaagtttctttattg
tccgatacagataattataatgaaaatgtggatgctgtttcaatgatgacaatgcatgca
gcaaaaggattagagtttaaaaatgtatttttgccaggatttgaagaagggatattccct
agatttcaagcaatttataaaccggaagatatagaagaagaacgtcgtcttgcatacgtt
gcaataactagagctaaagagaatttgtatattttaaattcaaatagcagaatgattttt
ggatgtaccagtaattacaaaccttcaagatttataaaagaattgtcttctgaattagta
gaaaaaactaaatctaaagattggaaaaaattaaatcccgaggaagatgaaccaagatct
gcttacgaattgcaattaaaatctacaatttcagctagaaaatttaacaaaataactgga
ggtataactacagaaccaggaaacaactttagaaataatttagaatttggagttggagac
aaagtaaaacatgcattatttggagaaggggaagttgtagacattttagacagtaatggt
acaattttagtcatagatttcttaaaagttggtataaaaaagcttgctcctcaatttttg
agtaaattaagcttagatagcaatagttcactttctgctcaaaaaaatagggatttttgt
gcacgcttggttcgtaaatattag
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