Paenibacillus tritici: KDC22_00605
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Entry
KDC22_00605 CDS
T07560
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ptri
Paenibacillus tritici
Pathway
ptri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDC22_00605 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptri03021
]
KDC22_00605 (rho)
03019 Messenger RNA biogenesis [BR:
ptri03019
]
KDC22_00605 (rho)
Transcription machinery [BR:
ptri03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KDC22_00605 (rho)
Messenger RNA biogenesis [BR:
ptri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KDC22_00605 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
ATPase_2
OB_RNB
AAA_22
S1CSD-TOTE-2
Spore_III_AA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QUL55146
LinkDB
All DBs
Position
126290..127648
Genome browser
AA seq
452 aa
AA seq
DB search
MDLQISDLEEMKLTDLYKLAKKYQIPYYGTLKKRELIFAILRAQAEQSGLMFMEGVLEIL
PEGYGFLRPINYLPSAEDIYISASQIRKFDLRSGDLVSGKCRTPKENERYFGLLQVNAVN
GENPATAAERLHFPALTPLYPQDKLPLETSPTHLSTRIMDLLAPVGLGQRGLIVAPPKAG
KTLLLKEIANSISTNNPEISLFVLLIDERPEEVTDMQRSVKGEVVASTFDELPENHIKVA
ELVLQRALRLVEHKKDVVILLDSITRLARAYNLVVPPSGRTLSGGIDPAAFHRPKRFFGS
ARNVEEGGSLTILATALIDTGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPAIDIRRS
GTRREEVLLSKEELDTIWSIRKNMNESYDFVEGFLKKLRDTKTNAEFLASFDVAGNKDSS
SASGTASKGGTSNSGSSARRTPRPKAPSVPTT
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcaaatttccgatctggaagaaatgaagcttaccgatctgtataagctggcc
aagaaataccagatcccttattacggaacgcttaagaagcgggagttaatcttcgccatt
cttcgggcacaggctgagcagagcggtcttatgtttatggaaggcgtgcttgagattctg
ccggaaggctatggcttcctcaggccgatcaactacttgccgagtgcagaggatatttat
atctccgcctcgcagatccgcaagtttgacctaagaagcggagacctggtatccgggaaa
tgccggacccccaaagagaacgaacgttattttggattgctgcaggtcaatgccgtcaat
ggcgagaaccctgctactgcggctgaacggctgcatttcccggcgcttacgccgctgtat
ccgcaagacaagctgccgctcgaaacatccccaacccatctgtctacccgtattatggat
ttgcttgctcctgtaggtctgggacagcgtggtttgattgtagcacctcccaaagcaggt
aagacgctccttctgaaagaaattgccaacagcatctccactaataatcctgagatttcg
ctgtttgtactgctaattgacgaacgccccgaggaagtaacggatatgcagcgttcggtt
aaaggtgaggtagtggcttcgacattcgatgagctgccggagaatcatatcaaagtggct
gagcttgtgctgcagcgtgcgctgcggctggtagagcacaagaaggatgtcgtaattctg
ctggacagcattacccgtcttgcccgtgcctacaatctcgtggttccgccatccggccgg
accctgagcggagggattgatcccgccgccttccatcgtcccaagcgcttcttcggttcc
gcgcgtaacgtggaagaaggcggaagcttaaccattctggcaaccgcgctgattgatacc
ggatcgcgtatggacgatattatctacgaagaattcaagggtacagggaacatggagctt
catctggaccgtaagctggcagaacgccgtatcttcccggctattgatatccgccgttcg
ggtacacgccgcgaagaagtgctgctgagcaaggaagagctcgataccatctggtccatc
cgtaaaaatatgaacgaatcctacgacttcgtagaaggtttcctgaagaagctgcgtgac
accaagacgaatgctgaattcctggcctcctttgatgtagccggcaataaggattcctcg
tccgcaagcggtaccgccagcaagggcggaacctcgaacagcggctcgtccgcccgccgc
accccgcggcccaaggccccttcggtgcctacaacctga
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