Paenibacillus tritici: KDC22_00935
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Entry
KDC22_00935 CDS
T07560
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptri
Paenibacillus tritici
Pathway
ptri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDC22_00935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptri03019
]
KDC22_00935 (rnr)
03016 Transfer RNA biogenesis [BR:
ptri03016
]
KDC22_00935 (rnr)
Enzymes [BR:
ptri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KDC22_00935 (rnr)
Messenger RNA biogenesis [BR:
ptri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDC22_00935 (rnr)
Transfer RNA biogenesis [BR:
ptri03016
]
Prokaryotic type
tRNA degradation factors
KDC22_00935 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QUL57946
LinkDB
All DBs
Position
185445..188492
Genome browser
AA seq
1015 aa
AA seq
DB search
MITQEILLDFMRETAYKPLTYEELVSHFAIEDSAQFKAFEGLLIELEKDGRIILTRNSRY
GVPERMDLLRGRLQAHAKGFAFLIPDDKEHPDVYIHANDLKGAMNGDIVLIRITSKSPSG
GRMEGEVERILIRGVSQTVGVFQSMETYGFVLPDDKRINRDIFIPKESFKGAVDGEKVVV
RIVNYPEGRSAAEGEIIEILGHKDDPGVDILSVIRKHQLPEAFPAEVMTEAEQAPDSITD
EEIIQQGRRDLRGLNIVTIDGADAKDLDDAVNVERLENGHYKLGVHIADVGYYVREGSEL
DKEAYDRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFDEQMKVVKHDVFT
SVIRTKERMTYSDVRKIVEDEDPELLERYAPLIGDFRLMKEIAMKLRDARMRRGAVDFDF
EESKIIVDETGKAIDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDP
EKLQNFMAFAANFGHHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDA
ESTGHFGLAAEFYSHFTSPIRRYPDLVIHRVMREVLENGGALTEKRHEYLASRMPDIAQQ
SSERERVAVEAERDTEQLKKAEFMQDKVGEEFDAMISSVTSFGMFIELDNTVEGLIRLSA
LSDDYYHFDEAHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMKPRAAGDHR
NYGGRGGKGGRPGAGGLSKPFSGKAGGGKGRGKGKPGSAAAGAKSGAAKGKNGSAGKGGI
FGGAGKGKNGTGAGKGGIFGGAAKGKNDAGADTGGIFGSAGKSSGADAGAGEGPRADAAP
AGDSGGAAGSGRKRGRGPEAAARRALAAASAAGGAAKADRRGEAGGGHAPRERGRGRGAE
AGGGAGGRGIAFGFGSGKGGYGAPGGGGSEQAGGELRGVDASTRFRSREDLGADGRGAAP
EDKGRRKKKKGGVFIGTSVTPGNVETTNPAAAGAGDQSGNPEGGGRKKRKKKPQE
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgataacacaggaaatcttacttgatttcatgcgggagaccgcttataaaccactgact
tatgaagaactggtgagccatttcgcaattgaggatagtgcacagttcaaagccttcgag
ggcttgctgatagaactggaaaaggacggccggatcattctgacccggaacagccgctat
ggcgtacctgagcggatggatttgttgcgcggacggctacaggctcatgcgaagggtttt
gcttttctgattcccgatgacaaagagcacccggatgtatatatccacgccaatgatcta
aaaggcgcaatgaatggcgatatcgtattgatccgcattacctcgaaaagcccgtccggc
gggcgtatggaaggtgaagtggaacggatactgatcagaggcgtgtcgcagacggtgggc
gtcttccagagtatggagacctatggcttcgtgctgcctgatgataagcggattaaccgg
gatattttcattcccaaggaatctttcaagggtgcagtggacggggaaaaggttgttgtc
cgcattgtgaactatccggaaggccgctctgcggctgagggtgagatcattgagatcctt
ggtcataaggatgacccgggtgtggatattctgtcggtcatccgcaagcatcagctgccg
gaggcttttccggctgaggtgatgacggaagcggagcaggcaccggattccatcacagat
gaagagattatccagcagggccgccgtgatctgcgcggacttaatatcgtaacgattgac
ggggcggatgcgaaggatctggatgatgcggtgaacgttgagcgcctggagaatggtcat
tataagctgggtgttcatatcgccgatgttggctattatgtgcgcgagggctcagagctg
gacaaggaagcctatgaccggggatgcagcgtatatctggttgaccgggtcattccgatg
cttccgcaccggctgtcgaacggcatttgcagcttgaatccgcaggtagaccgtctgacg
atgtcctgtgagatggaattcgacgagcagatgaaggtcgtgaagcatgatgtgttcacc
agtgtaatccgtaccaaggagagaatgacctattcggatgtacgcaagattgtcgaggat
gaagatcctgagctgctggagcgttatgctccgctgatcggtgatttccggctgatgaag
gagatcgcgatgaagctgcgcgatgcccggatgcggcgcggggcggttgacttcgacttt
gaagaaagcaagatcatcgtagatgagaccggtaaggctatcgacattgtgaaacgtgag
cgttctgtggcagagcagattatcgaggagttcatgcttgcggcgaatgagacggtggct
gaacacttccactggctaaaggtaccgttcctgtaccggattcatgaagatccagacccg
gagaagctgcagaatttcatggcttttgccgctaatttcggccatcacgtgaagggacgg
gggaattctgtccatccgcgcgccttgcaggatctgctggagcagattcagggtaccaag
gagcagacggtgatcagcacgatgatgcttcgctccatgaagcaggcgaaatatgatgcc
gagagcactggacatttcgggctggcggcagaattctattcccacttcacctcccctatc
cgccgttatcctgacttggtcattcaccgcgtcatgcgtgaggtactggagaacggcggg
gcgctgacggagaaacgccatgaatacctggcatcccggatgccggatatcgcccagcag
tcatcggagcgtgagcgtgtggccgtagaggctgagcgcgataccgagcagctgaaaaaa
gcagaattcatgcaagacaaggttggcgaggaattcgacgccatgatcagcagtgtgacc
agcttcgggatgttcattgagctggacaacaccgtcgaaggtctgatccgactcagtgcg
ctgagcgatgattactaccatttcgacgaagcccatatggcactcattggtgagcgtacc
tctaaggtgttccgcatcggcgacgaggtgaagatccgtgtagccaaggtgaatatggat
gaccacaccatcgacttcgagctggtcgatatgaagccgcgtgcggcgggagaccaccgc
aattacggtgggcggggcggcaaaggcggccgtccgggcgccggaggcctcagcaagccg
ttctcaggcaaagccggaggcggcaagggccgcggtaaaggcaagcccggcagcgctgct
gccggtgctaagagcggcgctgccaagggcaagaatggcagcgcgggcaaaggtggcatc
ttcggcggtgccgggaagggcaagaacggcaccggggccggtaaaggcggcatttttggc
ggtgccgctaagggcaagaacgatgccggagccgatacaggcggcatcttcggtagtgca
ggcaagagcagcggcgctgacgctggcgccggagaagggccgcgcgcagatgcagcgccg
gctggggacagcggcggcgcagcaggcagcggccgcaagcgcggacgcgggccggaagct
gcggcgcggcgtgcacttgccgccgcgtcagcagcgggcggcgcggcgaaggcagaccgc
cggggcgaagccggcgggggtcatgctccgcgcgagcgcggcagaggccgcggcgcagag
gccggtggcggtgccgggggacgcggtatagccttcggcttcggctccggcaagggcggc
tacggcgcgccgggcggtggcgggtccgagcaggcgggcggtgagctgcgcggcgtagac
gcgagcacacggttccgcagccgcgaggatctcggggccgacggccgcggcgcagcgccg
gaggataagggacgccgcaagaagaagaaaggcggcgtcttcatcggtacttcggtaact
ccaggtaacgtggagactaccaatccggcagcggcaggcgctggcgatcagagcggcaac
ccggagggcggcggccgcaagaagcggaagaagaagccacaagagtag
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integrated database retrieval system
