Paenibacillus tritici: KDC22_03440
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Entry
KDC22_03440 CDS
T07560
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ptri
Paenibacillus tritici
Brite
KEGG Orthology (KO) [BR:
ptri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptri03009
]
KDC22_03440 (rlmD)
Enzymes [BR:
ptri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KDC22_03440 (rlmD)
Ribosome biogenesis [BR:
ptri03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KDC22_03440 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
Cons_hypoth95
Methyltransf_12
Methyltransf_32
OST-HTH
PCMT
Methyltransf_23
Methyltrans_SAM
TPMT
RrnaAD
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QUL55639
LinkDB
All DBs
Position
776809..778347
Genome browser
AA seq
512 aa
AA seq
DB search
MSKQRSGRSASRREQGPASAAGLPVNKNDEVLLDIIGMTHEGEGVGRVEGFTLFVQGALP
GEKVRARVLKTKKQYGYAKLLELVQASPDRIGPPCPIYDQCGGCQLQHMDYTAQLAWKRQ
LVVDNLQRIGKLQVAGAASRGAVSGSAEKDAEPAAVEGGSAGDAGYPAEGIRVLPTLGMD
EPWRYRNKAQVPIGVTDGGLVGGFYARGSHRIIDMETCLIQHEDNDKVVATVKSLGRELG
ITAYDEETGRGLLRHVVVKKAFRTGQMMLVLVTNGRDIPHLDAWLGSIREQLPAVVSICH
NINTQRTNVIFGNDTRVLWGSDVIYDYIGDVQFAISARSFYQVNPAQTEVLYGRTLEYAA
LTGKETVIDAYCGIGTISLFLAQHADQVYGVEIVPEAIEDARANAKLNGMNNVKFEVGAS
EDVIPAWKEQCVTPDVIVVDPPRKGCDPRLLETILLMQPERVVYVSCNPSTLARDLRVLE
DGGYRAVEVTPVDMFPHTVHVECVVGIRRVDT
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacaacgcagcgggcgcagcgcaagccgccgggaacaaggaccggcctctgct
gccggactgccagtgaataagaatgacgaggtcctgctggatattatcggcatgacccat
gaaggagaaggggtgggccgcgtagagggctttaccctttttgtgcagggcgcgctcccc
ggtgagaaggtccgggccagagtgctgaagaccaagaagcagtacggctacgccaaactg
ctggagctggtgcaggccagccccgaccgtatagggccgccttgcccgatctatgaccaa
tgcggcggctgccagctgcagcatatggactataccgcccagctggcctggaagcgccag
ctggtggtggacaacctgcagcggatcgggaagctgcaggtggcgggtgcggcaagcaga
ggagcagtaagcggcagcgctgagaaggatgcggagcctgcagcggttgaaggtggtagt
gcgggcgatgcaggttaccctgctgagggtatccgcgtcctgcctacactcggcatggac
gagccctggcgctaccgcaacaaagcccaggtgccgattggggttacggatggcggtctg
gtgggcggcttctacgcacgcggcagtcaccggatcatcgacatggagacctgtctgatc
cagcatgaggacaacgacaaggttgttgccaccgtcaagagcctcggccgtgagctgggc
atcaccgcctatgacgaagagaccggtcgtggactgctccgccatgtcgtggtgaagaag
gcgttccgcaccggtcagatgatgctggtgctggtcacgaacggccgggatatcccgcac
ttggacgcctggctcggcagtatccgcgagcagcttccggcagtggtcagcatctgccat
aacatcaacacccagcggaccaatgtcatcttcggcaacgatacccgcgtcttatggggc
agtgatgtgatctacgattatatcggagatgtgcagtttgccatctcagcccgttccttc
taccaggtgaacccggcccagaccgaggtattgtacggcagaactctggagtatgctgcg
ctaaccggcaaagagactgtgattgatgcatattgcggcatcggtaccatctccctattc
ctggcccaacatgcggatcaggtgtatggtgtagaaatcgtgcccgaagccatcgaggac
gcccgcgccaacgcgaagctgaacggaatgaacaacgtgaagttcgaagtcggcgcttcg
gaggatgtcatcccagcctggaaagaacagtgcgtcaccccagacgtcatcgttgtcgat
cccccacgcaagggctgcgacccgcgcctgctggagaccatcctgctgatgcagccggag
cgtgtcgtgtacgtgtcttgcaacccgtccaccctggcacgcgatttgcgggtgctggag
gatgggggctaccgggcggtggaggttactccggtggatatgttcccgcacacggtgcat
gtggagtgtgtagtgggcatacgtcgagtcgatacttag
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