Paenibacillus tritici: KDC22_03655
Help
Entry
KDC22_03655 CDS
T07560
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptri
Paenibacillus tritici
Brite
KEGG Orthology (KO) [BR:
ptri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptri03016
]
KDC22_03655
Enzymes [BR:
ptri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KDC22_03655
Transfer RNA biogenesis [BR:
ptri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KDC22_03655
Prokaryotic type
tRNA splicing ligases
KDC22_03655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QUL55680
LinkDB
All DBs
Position
848194..849420
Genome browser
AA seq
408 aa
AA seq
DB search
MAYTTIDGVRVWGKPDDGALVQARMCAENGNVVQTLLMADHHKGYSQPIGGVVVYDGQIS
PSGVGYDIGCGNKAVRTRLTMAELRPRLSGIMDEIARRISFGVGRVNNERVDHELFDDPD
WDVFKAVGRVEHDKLKALAQSQLGTVGSGNHFVDLLEEAGDGRVWIANHFGSRGFGHKTA
SGFLNLAAGRDFLANAPGEKMDQPPVLLDLSSELGDMYYRAMKLAGRYAYAGREYVIRQV
LAILGTEADLEVHNHHNYAWKETHNGKEVVVVRKGATPSAPGQVGFIGGSMGDISVIVKG
KDSAENKDSYYSTVHGAGRIMSRTQAAGRMNWKTRTRSGGQISTAQMLGAVRDFGVELRG
AGTDESPFVYRKLQEVLDAHAGTIEVMHVLKPVGVCMAGANEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcttatacaacaatagacggcgtgcgggtgtgggggaagccggacgacggcgcgctg
gtgcaggcccgtatgtgtgcggagaacgggaatgtggtgcaaactctgctcatggcggat
catcataaaggctacagtcagcccattggcggggtggtcgtgtacgatgggcaaatctcc
ccgtctggcgtgggttatgatattggctgcgggaacaaggcggtgcggacccgcttgacc
atggctgagctgcggccgaggctctcaggaatcatggacgagattgcccgcagaatctcc
ttcggagtcggccgtgtcaataatgagcgggtggatcatgagctgttcgatgacccggat
tgggatgtgttcaaggcagtcggcagagtggagcatgacaagctgaaggctctggcccag
agtcagctaggcacggtcggcagcggtaaccacttcgtagacttgctggaagaagccgga
gacggccgggtgtggattgccaatcatttcggaagcagagggttcgggcacaagacggcg
agcgggttccttaacctggctgcgggcagagactttcttgctaacgcccccggcgaaaag
atggaccaaccgcccgttctgctggatctcagcagtgagctgggcgatatgtattacaga
gcgatgaagctggcgggacgctacgcctatgcagggagggaatatgtgatccgccaggtc
ttagccatcctgggaacggaagcggatctcgaagtgcataaccatcataactatgcctgg
aaagaaacccataacggcaaggaagtcgtcgttgtccgcaaaggggcgaccccgtctgca
ccgggacaggttggttttatcggcggcagtatgggggatatatcggtaatcgttaagggc
aaggacagtgcggagaacaaggattcttactacagcaccgttcatggggcggggcggatt
atgagccggacccaggcggcaggccgaatgaactggaaaacccgcacccgcagcggcggc
caaatctcgacagcgcaaatgctcggagcggttcgcgatttcggtgttgagctgcgcggc
gcgggcacggacgagagcccttttgtgtaccggaagctgcaagaggtgctggatgcgcac
gcgggaaccatcgaggtcatgcatgtactgaagccggttggggtatgtatggcgggagcg
aatgagttcgatccgtataaggattga
DBGET
integrated database retrieval system
