Paenibacillus tritici: KDC22_11170
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Entry
KDC22_11170 CDS
T07560
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptri
Paenibacillus tritici
Pathway
ptri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDC22_11170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptri03019
]
KDC22_11170
03009 Ribosome biogenesis [BR:
ptri03009
]
KDC22_11170
Enzymes [BR:
ptri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDC22_11170
Messenger RNA biogenesis [BR:
ptri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDC22_11170
Ribosome biogenesis [BR:
ptri03009
]
Prokaryotic type
rRNA helicases
KDC22_11170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_19
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QUL56983
LinkDB
All DBs
Position
2667774..2669438
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AA seq
554 aa
AA seq
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MKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPLAMAGSDLIGQAQTGTGKTAAFGIPL
ISKIAREEEKIVALIMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML
FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYVEVPERQKFEALSRLIDMESP
DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRITAERLLAMVEDGELNEYKGIAIQLLEQYDSVQLLSAAMK
LLTGDNKDAQIELTPEDPIRAKRRGGKNDIRSGRKPNSGYGGNRTGSSSGGGYKGNRDNA
SGGGYRGNRDNASSGGSTRGGYSSGYGGNSGSGGSSYGGGYKGNRDGATRSTDARPSSRP
SSTSTRPAKQDYDA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaattcggcttggagccaaaagtacttcaagcaatcacagagcta
ggatttgaggaagcaacccccattcaggagcaggcaattccgcttgctatggccggatcg
gacttgatcggccaggcacagacgggtacaggtaagactgctgcattcgggattcccctc
atttccaagatcgcccgggaagaagagaagattgttgcactgattatgaccccgactcgt
gagcttgccattcaggttgctgaagagatcggcaaattgacccgcttcaaaggacttcgt
tcactggcgatttacggcgggcaggatatcggccgtcagatccgcggacttaagaagaaa
ccacagattattattggtacaccaggacgtctcctggaccatatcaaccgcaaaaccatc
cgcctggatgatgttcagaccatcgtactggacgaagccgatgaaatgctcgacatgggc
ttcatggaggatatccaaacgatcctcaagctcgttccagaagaacgtcagaccatgctc
ttctcggctactatgcctcctaacatccaacgccttgcccagcagttcctgaagaacccg
cagcatgtatccgtaattcctaagcagatcagcgctccgcttattgaccaggcttatgtt
gaagtgccggaacgccagaaattcgaagcgctcagccgcttgattgacatggaatcccct
gatctggctatcgtattcggccgcaccaaacgccgggtagacgagcttgctgaaggattg
cagaaacgcggatattccgctgacggcctgcacggtgacttgtcgcagaatcagcgcgat
gctgtaatgcgcaaattccgcgacggcagcattgatgtactggtagctacagacgttgct
gcacgcggtctggacgtatccggcgtaacgcatgtaatcaacttcgaccttccgcaggac
ccggaaagctatgtacaccgtatcggccgtactggccgtgccggtaaagaaggtactgca
tggtccttcgtgactccgcgtgagatggatcatctgcacctgatcgagcgcgttacccgt
caccgcattacccgcaaaccgcttccaacgatggctgaggctattgaaggcaaacaacgc
attacagcagaacgtctgcttgcaatggttgaggatggcgaattgaacgaatacaaaggc
attgccattcaattgctggaacagtatgattctgtacagctgctgtccgcagctatgaag
cttcttaccggcgataacaaggatgcgcagattgaattgactccggaagatccgatccgt
gcgaaacgccgcggcggcaagaacgatatccgcagcggacgcaagcctaacagcggctat
ggcggcaaccgtacgggttcaagttccggcggcggctacaaaggcaaccgtgacaacgca
agcggcggcggctatcgcggcaaccgtgacaatgcaagcagcggcggaagcacacgtggc
ggctacagcagcggctatggcggcaacagtggcagcggcggaagcagctacggcggcggc
tacaaaggcaaccgtgatggagcaacccgtagcacagatgcaagaccgtcatcgcgtccg
agcagcacaagcacgcgcccggccaagcaggattatgacgcttaa
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