Pseudomonas triclosanedens: OU419_02620
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Entry
OU419_02620 CDS
T09689
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OU419_02620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrl03021
]
OU419_02620
Transcription machinery [BR:
ptrl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OU419_02620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
PhyR_sigma-like
Rv2175c_wHTH
HTH_17
MerR
Sigma70_r3
HTH_11
HTH_24
FaeA
T2SS_GspM_XcpZ
HTH_28
HTH_29
HTH_31
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
WAI50182
UniProt:
A0ABY6ZZZ8
LinkDB
All DBs
Position
complement(562156..562674)
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AA seq
172 aa
AA seq
DB search
MSAVQIGNGERVGALYRDHRDWLTAWLNRSLGCPQRAEDLSQDTFVRVLGRRELPSLREP
RAFLVTIARGLLVDHWRRLALEQAYLEELQLMPEAVQPSAQEHCLILADLREIDRLLGSL
SARARSAFLLNRLDGLGHAEIAEHLGVSVSRVRQYIAQGLRQCYIALYGTPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggccgtccagataggcaatggcgaacgcgtgggtgcgctgtaccgcgatcatcgc
gactggctgaccgcctggctcaaccgcagcctgggctgccctcaacgcgccgaagacctg
agccaggacaccttcgtccgcgtgcttggccgccgcgaactaccctccctgcgcgagccg
cgcgccttcctggtgaccatcgcccgcggccttctggtcgaccactggcgccggctggcg
ctggagcaggcgtacctggaagagctgcaactgatgcccgaagccgtgcaaccttcggcg
caagagcactgcctgatccttgccgacctgcgggaaatcgaccgcctgctcggcagcctg
tctgcccgcgcgcgcagcgccttcctgctcaaccgcctggatggactgggccatgccgag
attgccgagcacctcggggtttccgtttcccgcgtgcgccagtacatcgcccagggcctg
cgccagtgctatatcgcgctgtacggaacgccgacgtga
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