Pseudomonas triclosanedens: OU419_03295
Help
Entry
OU419_03295 CDS
T09689
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OU419_03295 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrl03021
]
OU419_03295 (rpoB)
03400 DNA repair and recombination proteins [BR:
ptrl03400
]
OU419_03295 (rpoB)
Enzymes [BR:
ptrl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OU419_03295 (rpoB)
Transcription machinery [BR:
ptrl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OU419_03295 (rpoB)
DNA repair and recombination proteins [BR:
ptrl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OU419_03295 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WAI50305
UniProt:
A0ABY7A260
LinkDB
All DBs
Position
696960..701033
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQVRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALNYSTEEILNAFYDTNVFQIKGET
LNLELVPSRLRGEIASFDIKDASGKVIVEAGRRITARHINQLEKAGITQLEVPFDYLIGR
TVAKAVVHPATGEIIAECNTELTVDALAKIAKAQVARLETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GPGVLSKEDIVEVLKTLVAIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK
DGLVSDEIVFLSAIEEADHVIAQASATLNEKGQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVQKGD
KVSRSDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALVGAKADGGPALKKGAEITDEYLDGLERGQWFKLRMA
EDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKIAELRVFLNEIYNEIGGRQENLDELNDNEILALANNLKGGVPMATP
VFDGAKEREIKAMLKLADLPESGQMRLYDGRTGNQFERTTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatttgctggccatccagctggattcctatcgcgaattcctgcag
gccggcgcgagcaaggaccaggttcgagacatcggcctgcatgcggccttcaagtccgtt
ttcccgattatcagctattccggcaatgctgccctggaatacgttggctaccgtctgggt
gagccggcattcgacgtcaaggaatgcgtgctgcgcggtgtgacctttgccgtcccgctg
cgtgtgaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaggaacaggaagtctacatgggggaaatccccctgatgaccgagaacggcaccttc
atcatcaacggtaccgagcgtgtcatcgtttcccagctgcaccgctccccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctccggcaagctgctgtactccgctcgcatc
attccttaccgcggttcctggctggacttcgagttcgatccgaaggattgcgtgttcgtc
cgtatcgaccgtcgccgcaaactgccggcgtctgtcctgctgcgtgcgctgaactacagc
acagaggaaatcctcaacgcgttctatgacaccaacgtcttccagatcaagggcgagacc
ctgaacctggagttggtgccgtcgcgtctgcgcggcgagatcgccagcttcgacatcaag
gatgccagcggcaaggtcatcgtcgaagcgggtcgccgtatcaccgcgcgtcacatcaac
cagctcgagaaggccggcatcacccagttggaagtgccgttcgactatctgattggccgt
accgtggccaaggcagtcgtgcacccggccaccggcgagatcatcgccgagtgcaacacc
gagctgaccgtcgatgccctggccaagatcgccaaggcccaggttgcccgcctggaaacc
ctgtacaccaacgacatcgactgcggtccgttcatttccgacacgctgaagatcgattcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccgaccaaggaagccgccgagaccctcttcggcaacctgttcttcagcgccgagcgttac
gacctgtccgccgttggccgcatgaagttcaaccgccgcatcggtcgcaccgagatcgaa
ggcccgggcgtcctgagcaaggaagacatcgtcgaggtcctcaagaccctggttgccatc
cgtaacggtaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgtccgctgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgtgtagagcgcgcggtc
aaggaacgtctgtcgatggccgaaagcgaaggccttatgccgcaggacctgatcaacgcc
aagccggtggccgccgcgatcaaggagttcttcggctccagccagctgtcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtctccgcactcggccca
ggtggtctgacccgtgagcgcgcgggcttcgaggttcgtgacgtacacccgacccactac
ggccgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gccacctatgcccgcaccaacaagtacggcttcctggaaagcccgtatcgcgtggtgaag
gacggtctggtcagcgacgagatcgtcttcctgtccgccatcgaagaggccgatcacgtg
atcgcccaggcctctgcgaccctgaacgaaaagggtcagctgatcgacgaactggttgcc
gtgcgtcacctgaacgaattcaccgtgaaggcgccggaagacgtcaccctcatggacgtt
tcgccgaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggttcgaacatgcagcgccaggctgtaccgaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgcaacgtcgcccgtgactccggtgtctgc
gtggtggcccgtcgtggcggcgtgatcgactcggtcgacgccagccgtatcgtggtccgc
gtgaacgatgacgaagtcgagactggcgaagccggcgtcgacatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgcagaagggtgac
aaggtttcgcgcagcgacatcctggccgacggtccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgtgtcgcgttcatgccctggaacggcttcaacttcgaagactcc
atctgtctgtccgagcgcgtggtccaggaagatcgtttcaccacgatccatatccaggaa
ctgacctgcgttgcccgtgacactaagctcggcccagaagaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaacaagctggacgaagccggtatcgtctacgtcggcgcc
gaagtacaggccggcgacatcctggtcggcaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgtgcgatctttggtgagaaggcgtccgatgtgaaggac
acctccctgcgcgtgccgaccggcaccaagggcaccgtcatcgacgtacaggtcttcact
cgcgatggcgtcgagcgcgacagccgcgccctgtccatcgagaagatgcagctggacgag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggcgcaaccttcgagcgtctg
cgttccgctctggtcggtgccaaggctgacggcggtcctgccctgaagaaaggcgcagag
atcaccgatgagtacctggacggcctcgagcgcggccagtggttcaaactgcgcatggcg
gaagatgctctgaacgagcagctggagaaggcccaggcctacatcagcgatcgccgtcag
ttgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgacgacctggct
ccgggcgtactgaagatcgtcaaggtctacctcgccatcaagcgccgcatccagccgggc
gacaagatggcgggccgccacggtaacaagggtgtggtctcggtgatcatgccggtcgag
gacatgccgcacgatgccaacggtactccggtcgacatcgttttgaacccgctgggcgta
ccctcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctcgcggcgaagggc
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaagatcgctgagctgcgtgtg
ttcctgaacgagatctacaacgagatcggtggccgccaggaaaacctggatgagctgaac
gataacgagatcctcgctctggccaacaacctcaagggcggcgtgcccatggctactccg
gtgttcgacggtgccaaggagcgcgagatcaaggccatgctgaagctggccgatctgccg
gagagcggtcagatgcgtctgtatgacggccgcaccggcaaccagttcgagcgtacgacc
accgttggttacatgtacatgctcaagctgaaccacctggtcgatgacaagatgcacgca
cgttccaccggctcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgtttcggggagatggaggtctgggctctggaagcctacggcgccgcctac
accctgcaggaaatgctgaccgtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggacggcgatcaccgcatggaggccggcatgcccgagtccttcaacgtg
ctgatcaaagagatccgctcgctcggcatcgatatcgaactggaaaccgaataa
DBGET
integrated database retrieval system
