Pseudomonas triclosanedens: OU419_03300
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Entry
OU419_03300 CDS
T09689
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OU419_03300 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrl03021
]
OU419_03300 (rpoC)
03400 DNA repair and recombination proteins [BR:
ptrl03400
]
OU419_03300 (rpoC)
Enzymes [BR:
ptrl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OU419_03300 (rpoC)
Transcription machinery [BR:
ptrl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OU419_03300 (rpoC)
DNA repair and recombination proteins [BR:
ptrl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OU419_03300 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
DUF3150
Motif
Other DBs
NCBI-ProteinID:
WAI50306
UniProt:
A0ABY7A189
LinkDB
All DBs
Position
701100..705299
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLNAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNHPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSG
QVSLHARVKVRINEKVKGEDGQLTANTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVTDREGKQVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMSPHIEGGDVVEPLGERVL
GRVIARDVFKPGSDDVIVEAGTLIDEKWVDFLEQMSVDEVVVRSPITCETRHGICAMCYG
RDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIRL
HNLKYVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDPGAIVAKW
DPHTHPIVTEMDGTVAFVGMEEGITIKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKL
IDAAGKDLLLPGTDVPAQYFLPANALVNLNDGAKVRIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVFE
GEQVSRGEVISDGPSNPHDILRLLGVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVAESGDSSFIKGDQVELVQVLEENEVLATQDKFPAKYERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRDLGKPQR
VSASEAEAALAEALNLSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgcttaatctgttgaaaaaccagggtcagatcgaagagttcgatgccatc
cgtattggcctggcctcgcccgagatgatccgttcctggtccttcggcgaagtcaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgcgatggcctgttctgcgccaag
atctttggcccggtgaaggactatgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgtggaagtcgcgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcctcgccggtcgcccatatctggttcctgaagtccctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgtgacatcgagcgtgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccctggaaaagggccaactgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgactttgacgcccgcatg
ggtgcggaggccgttcgcgagctgctcaacgctatcgatctggagcacgagatcggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttccagggctccggcaaccatcccgagtggatggtgctgacc
gtcctgccggtgctgccgccggacctgcgtccgctggttccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctggccgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagccgtcgacgccctgctggataacggccgtcgcggccgtgccatcaccggttcgaac
aagcgcccgctgaagtccctggccgatatgatcaagggcaagcagggtcgcttccgtcag
aacctgctcggcaagcgcgtggactactccggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggcctgccgaagaaaatggccctggagctgttcaagccgttc
atcttcggcaagctggaaggtcgtggcatggccaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccggaggtgtgggacgttctcgccgaagtcatccgcgagcacccc
gtactgctgaaccgtgcaccgaccctgcaccgtctgggcatccaggcgttcgagccggta
ctgatcgaaggtaaagccatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgttccgctgaccctcgaggctcagctggaagcg
cgcgcgctgatgatgtccaccaacaacatcctctcgcccgccaacggcgagccgatcatc
gttccttcgcaggacgtggtaatgggtctgtactacatgacccgtgaagcgatcaacgcg
aagggcgagggcatggcattcgccgacctgcaggaagttgaccgcgcctaccgcagcggc
caggtgtccctgcacgcccgtgtgaaagtgcgcatcaacgagaaggtcaagggcgaagac
ggtcagctgaccgccaatacccgtatcgtcgacaccaccgttggccgtgcgctgctgttc
caggttgttccggccggcctgcccttcgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccattgctaccgcgtggtgggtctgaaggacaccgtcatcttc
gctgaccagctgatgtacaccggcttcgcctactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcatcccggacgaaaaggcccgcatcatcgatgctgccaccgaggaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtgaccgatcgcgagggcaagcaggtcgaccaggagtccttcaac
tccatgtacatgatggcggactccggtgcgcggggttccgcggcccagatccgtcagctg
gccggcatgcgtggcctgatggccaagccggacggctccatcatcgagaccccgatcacc
gcgaacttccgtgaaggcctgaacgtactccagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgacccgtcgtctc
gtcgacgtggcccaggacctggtggtaaccgagattgactgcggcaccgaacatggcctg
gtcatgtccccgcacatcgaaggcggcgacgtggtggagccgctgggtgagcgtgtgctt
ggccgtgtgattgctcgcgacgtattcaagccgggcagcgacgacgtcatcgtcgaggct
ggcaccctgatcgacgagaagtgggtggacttcctcgagcagatgagcgtcgatgaagtt
gtggttcgttcgccgatcacctgtgaaacccgccatggcatctgtgccatgtgctatggc
cgtgatctggcccgtggtcatcgcgtgaatatcggtgaggctgtcggcgttatcgctgcc
cagtcgatcggcgagccgggtacccagttgaccatgcgtaccttccacattggtggtgcg
gccagccgtacctctgctgcggataacgtgcaggtcaagaacggcggtaccatccgcctg
cacaacctgaagtacgtagagcgtgccgacggtgccctggtagcggtttcccgttccggt
gagctggcggtagccgatgacttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gcggtcatttccgtgaaggaaggtgacaaggtcgatccgggtgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgagatggacggtaccgtggccttcgtgggcatg
gaagagggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacatcgag
gtgatggatccgaaggatcgtccggctgccggcaaggacatccgtccggccgtgaagctg
atcgacgccgcaggcaaggatctgctgctgccgggtacagacgtgccggcccagtacttc
ctgccggcgaatgcactggtcaacctcaacgatggcgcgaaagtgcgcatcggtgacgtt
atcgcgcgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagctcgtcgtccgaaagagccttcgatcctggcggaaatcagc
ggcaccatctccttcggtaaggaaaccaagggcaagcgccgtctggtcatcactcctacc
gacggtagcgagccgtacgaggagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggtgagcaggtaagtcgtggtgaagtgatctccgacggtccgagcaacccgcacgacatc
cttcgtctgttgggcgtcagctcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ttgcgcaaggtcgaagtcgccgagtcgggtgattcctccttcatcaagggcgatcaggtc
gagctggtgcaggtgctggaagagaacgaagtgctggctacccaggacaaattccctgcc
aagtatgagcgcgttctgcttggtatcaccaaggcctcgctgtccaccgagtcgtttatt
tcggcggcatccttccaggaaaccacccgcgtcctcaccgaggcggcggttaccggcaag
cgcgacttcctgcgcggcctgaaggaaaacgtcgtcgtaggtcgcttgatcccggcaggt
accggcttggcctaccacagcgagcgcaagcgtcagcgcgatctcggcaagccgcagcgc
gtcagcgcgagcgaagccgaagctgcattggctgaagcgctcaacctgagcggtaactaa
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