Pseudomonas triclosanedens: OU419_08020
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Entry
OU419_08020 CDS
T09689
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptrl
Pseudomonas triclosanedens
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrl03019
]
OU419_08020 (hrpA)
Enzymes [BR:
ptrl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OU419_08020 (hrpA)
Messenger RNA biogenesis [BR:
ptrl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OU419_08020 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
APHB_HrpA
DEAD
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
T2SSE
NACHT
AAA_25
ABC_tran
Zeta_toxin
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WAI51193
UniProt:
A0ABY7A267
LinkDB
All DBs
Position
1696109..1700128
Genome browser
AA seq
1339 aa
AA seq
DB search
MTTDSTPTPEQLLQRMDHALIRDRHRLRRQLHELRKHPDEAKLAQWAERFQASCAKVEAR
RASIPAIRYDDSLPIAAKRDEIKAALEKSQVVVVAGETGSGKTTQLPKICLELGRGVHGL
IGHTQPRRLAARSVATRVAEEVGTPLGSLVGYQVRFEDQSDDSTLIKLMTDGILLAETQH
DRYLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKLIITSATIDLERFSKHFGNA
PIVEVSGRTYPVETWYRPLAAEVDEDGEALFDDLSVDQGILRALDEIAAHEREVGKRPGD
VLVFLPGEREIRDAADMLRKANLRHTEVLPLYARLTPAEQQKIFAPMPGRKIVLATNVAE
TSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLY
SEEDFNGRPAFTDPEILRTNLAAVILQMLHLRLGDIEAFPFIEPPDGKAINDGFTLLQEL
SAVNREGQLTPLGRQLARLPIDPRLGRMLLEAAQLGSLPEVLTVASALSVQDPRERPMDR
QQAADQAHAQWKDPDSDFAALINLWRGFEEQRQALGSNPLRNWCRKNFLNYLRLREWRDA
HRQLTLICRELQLPFGSKAEGAARKSEPAREQARAHDNRGRQPVARADEPKARDIDYAAV
HKAILSGLLSQIGQKAEEGDYLGARQRRFWIHPSSVIGRKKPQWIMAAELVETTKLFARM
VAKIEPDWLEPLAGHLVKKNYLEPHWEKRRGQVVAYEQVTLYGLIIIGRRAVHYGPIDPP
VAREMFIREALVRGEINSRAKCLSANRQLLEKLDELEAKARRRDILADEETLFAYYDERL
PADIYQSASFEKWYEREHKQQPNLLIMREEDVLARDASEVTAGLYPDRLRLGELQLPLSY
HFEPGHARDGVTVRVPAPLLPQLPAERLEWLVPGLLEAKCIELVRSLPKAIRKNFVPVPD
FVRAALGKMVFAEGALSESLGRELQRMTGSRVPEEAWAEAETQVESHLRMNIEVVDARGK
FLGEGRDLAELTARFAEASQAALAIPQADKPQKPVEAKGFGEVAEKVQQKVAGLSMTVYP
ALVEEAGVVKESRFPTQAEADYQHRRALQRLLLQQLAEPAKFLRSKLPGQTDMGLLYREL
GRVESLVEDILLASLDSAILDGESNLPRDGAGLASLAEKKRGAWTEHAERIARLTLEILK
LWHGLQKRFKGKVDLAMTVPLNDVKGQLAKLVYPGFVRDTPLEWLKEYPRYLKAVEQRLD
KVAGQVQRDRVWSGEMAGYWEQYSARLAKHAQEGKRDPELTLYRWMLEEYRVSLFAQQLG
TKVPVSDKRLSKQWSQVEA
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagacagcacgccgactcccgaacagctcctgcagcgcatggatcacgcactg
atccgcgaccgccatcgcctgcgccggcagctccatgaactgcgcaagcaccctgacgaa
gccaagctcgcccagtgggccgagcgcttccaggcatcctgtgccaaggtcgaggcgcgc
cgtgcgagcattcccgcgatccgctacgacgacagcctgccgatcgccgccaagcgcgac
gagatcaaggccgcgctggaaaagagccaggtggtggtggtcgccggcgagaccggctcg
ggcaagaccacgcagttgccgaagatctgcctggaactgggccgcggcgtccacggcctg
atcggccacacccagccgcgccgtctcgctgcccgcagcgtcgccacccgcgtcgccgag
gaagtcggcacgccgctgggctcgctggtcggctaccaggtgcgcttcgaggaccagagc
gacgacagcacactgatcaagctgatgaccgatggcatcctgctggccgaaacccagcac
gatcgctacctggagcgctacgacacgatcatcgtcgacgaagcccacgagcgcagcctg
aacatcgacttcctcctcggtttcctcaagacgctgttgccgcgccgcccggacctcaag
ctgatcatcacctcggcgaccatcgacctggagcgtttctcgaagcatttcggcaatgcg
cccatcgtcgaggtgtccggccgtacctacccggtggaaacctggtaccgcccgctggcg
gcggaagtggacgaggacggtgaagcgctgttcgacgacctctccgtggaccagggcatc
ctccgcgcgctggacgagatcgccgcacacgagcgcgaagtcggcaagcgtcctggcgac
gtgctggtgttcctcccgggcgaacgtgaaatccgcgatgccgccgatatgctgcgtaag
gccaacctgcgccacaccgaagtgctgccactgtatgcacgcctgactccggccgagcag
cagaaaatcttcgcgcccatgccgggccgcaagattgtgctcgccaccaacgtcgcggaa
acctcgctcaccgtacccggcatccgctacgtgatcgacagcggcactgcccgcatcagc
cgctacagctaccgcgccaaggtccagcgcctgcccatcgaggccatttcgcaagccagc
gccaaccagcgcaagggccgttgcggccgggtcgagccgggcatctgcgtgcgcctgtac
agcgaggaggacttcaacggccgcccggccttcaccgatccggaaatcctgcgcaccaac
ctcgcggcggtgatcctgcagatgctccacctgcgcctgggcgacatcgaggccttcccc
ttcatcgagccgccggatggcaaggcaatcaacgacggtttcaccctgctgcaggagctc
tctgcggtaaaccgcgaaggccagctcacgccgctgggccggcaactggcgcgcctgcct
atcgacccgcgcctgggccgcatgctgctggaagcggcgcaactgggcagcctgccggaa
gtgcttaccgtggccagcgcattgtcggtgcaggacccgcgcgagcggccgatggatcgc
cagcaggctgccgaccaggcccacgcgcagtggaaggacccggactcggactttgccgcg
ttgatcaacctctggcgcggtttcgaggaacagcgtcaggcgctgggctccaacccgctg
cgcaactggtgccggaagaatttcctgaattacctccgtctgcgcgagtggcgcgatgcg
caccgccaactgacgctgatctgccgcgaattgcagttgcccttcggcagcaaggcagaa
ggtgccgcgcgcaagagcgagcccgcccgcgaacaggccagggcacacgacaatcgcggc
cgccagccagtcgccagggcggatgaaccgaaggcccgcgacatcgactacgccgccgtg
cacaaggcgatcctctccggcctgctgagccagatcggccagaaggcggaagagggcgac
tacctcggtgcgcgtcagcggcgtttctggattcacccctccagcgtgatcggccgcaag
aagccgcagtggataatggccgccgaactggtggagaccaccaagctgttcgcccgcatg
gttgcgaagatcgagccggactggctggagccgctggccgggcacctggtgaagaagaac
tacctggagccgcactgggagaagcgccgtggccaggtggtggcctacgagcaggtcact
ctctacggcctgatcatcatcggtcgtcgcgccgtgcactacgggccgatcgacccgccg
gtagcgcgcgagatgttcatccgcgaggcgctggtgcgcggcgagatcaacagccgcgcc
aagtgcctgtctgccaaccgccagttgctggaaaagctcgacgagctggaagccaaggcc
cgtcgtcgcgacattctcgctgacgaggaaaccctgttcgcctactacgacgagcgtctg
ccggcagacatctaccagtccgccagcttcgagaagtggtacgagcgcgagcacaagcag
cagccgaacctgctgatcatgcgggaggaagacgtccttgcccgtgacgccagcgaagtc
accgccggcctctacccggaccgcctgcgcctgggtgagttgcaactgccgctgtcctat
cacttcgaacccggccacgcacgtgacggcgtgaccgtgcgtgtgccggcgccgctgctg
ccgcaactgcctgccgagcgcctggagtggctggtgccgggcctgctggaggccaagtgc
atcgagctggtgcgcagcctgcccaaggcgatccgcaagaacttcgtaccggtgcctgac
ttcgtacgtgctgcactgggcaagatggtctttgccgaaggtgcgttgtccgagtccctt
ggccgtgagttgcagcgcatgaccggtagccgcgtacctgaagaggcctgggcggaagcc
gagactcaggtggaaagccacctgcggatgaacatcgaagtggtcgacgcccgtggcaag
ttcctcggcgaaggccgtgacctcgccgagttgactgcgcgcttcgccgaggccagtcag
gccgcactggcgatcccgcaggcggacaagccgcagaagccggtggaagccaagggcttt
ggcgaggtggcggagaaggtccagcagaaggtcgcggggttgtcgatgacggtctacccg
gcactggtggaagaggccggtgtggtgaaggaaagccgcttcccgacccaggccgaagcc
gactatcagcatcgccgcgcgctgcagcgcctgttgctgcaacagctcgccgaacccgcc
aaattcctgcgcagcaagctgccggggcagaccgacatgggcctgctctaccgcgagctg
ggccgcgtcgaatcgttggtggaagacattctgctggccagcctggacagcgccattctc
gacggcgaaagcaacctgccacgcgatggtgccgggctcgcctccctggcggagaagaaa
cgcggtgcctggaccgaacacgccgagcgcatcgcccgtctgaccctggaaatcctcaag
ctctggcacggcttgcagaagcgcttcaagggcaaggttgacctcgccatgacggtgccg
ctgaacgacgtgaaggggcaactggccaagctggtctaccccggcttcgtgcgcgacacg
ccgctggagtggctgaaggaatacccgcgctacctgaaggcggtcgagcagcgcctggac
aaggtggcagggcaggtccagcgcgaccgcgtgtggagcggcgagatggccggctactgg
gagcagtattcggcacgcctggccaagcacgcccaggaaggcaagcgcgacccggagctg
acgctgtatcgctggatgctggaggagtaccgcgtgtcgctgttcgcccagcaactgggg
acgaaggtgccggtgtcggacaagcgcctgagcaagcagtggagccaggtcgaggcctga
DBGET
integrated database retrieval system
