Pseudomonas triclosanedens: OU419_10715
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Entry
OU419_10715 CDS
T09689
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU419_10715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrl03019
]
OU419_10715
03400 DNA repair and recombination proteins [BR:
ptrl03400
]
OU419_10715
Enzymes [BR:
ptrl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OU419_10715
Messenger RNA biogenesis [BR:
ptrl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OU419_10715
DNA repair and recombination proteins [BR:
ptrl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OU419_10715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
DUF2250
Motif
Other DBs
NCBI-ProteinID:
WAI51693
LinkDB
All DBs
Position
2272993..2278116
Genome browser
AA seq
1707 aa
AA seq
DB search
MSSVPQPKSLVIDLEVAPGKEGHPDRIFKIGAARPDLGVELDRKVSKNLPEILAEVDALS
DGAGFLLGHNVIEHDLPILKQQAPALALHSLPVIDTLRLSPLAFPQNPYHRLVKDYKLIR
DSLNSPLADCRSTLVLFRDQRDAFAQLNETNRAELLCYQALLAPSIKSDLGSFFASLTGQ
TAVPISDLQRLIPSLLAETDPSLDRDLKVCRARLEALLAEDLEQTDLHLPLAYALAWLRV
SGGNSVLAPWVRHQFSAVGRLITELRDVPCGRSDCRYCCTTHDPRHELKRYFGFADFRYE
RPGQSLQHDVVLAGMQGRHVLAILATGGGKSLCYQLPALNRFHRNGSLTIIISPLQSLMK
DQVDGLLERNVQCAATLNGLLTMPERADVLEKVQMGDVGILLVSPEQFRNKAFRRAIRQR
QIGAWIFDEAHCLSKWGNDFRPDYMYASRFIREHTGDQPLAPIGCFTATAKPDVLADIRD
HFKEGLGIEFDQFLGTHERTNLSFEVLPCSRGEKWPRTHQLLEDHLGGQDGGAVVFVASR
KGAEELSEFLVGQGWPCRHFHAGIEPNDKKDIQDDFKAGRLRIIVATNAFGMGVDKSDIR
LVVHADIPGSLENYLQEAGRAGRDQDAARCVLLYDSQDIETQFGLCERSKLSLRDIQQIL
RKLRFEYARRKGGELVITAGEILMDETVETSFDADDSDAETKVVTAVAWLERGQYLKREE
NSTQIFPARLSLSEADAEQRLLKANLSERRREEFGAILKYLYQADADERVNTDNLMSLTS
LTSEEVVSTLKQMEELGLLVNDTQLTVLLRHGVVDASIQRLEQTLALEGTLFEVLSELAP
DAEDGSWQDLNLAALTAGLKARLEHDDVIPLQVLRLLRSLSQDRESNSQPRSSFELKQVN
HDYIKLKVQGKYSWSQIERFGEKRRVIASKLLQFLIGKLAPASKGKDLMVQSTFGELVGV
IESDLELSQVIPPNQRQRAIEHVLLYLHKQEVLTLNHGMTVMRRAMTIEVNADKKGSYLK
DDYLRLDEHYSEKRIQVHVMREYAEVALGAMASALELVLHYFTDSKDAFLQRYFSGREEV
LKHATSEESWRSIVEDLSTQQRLIVVDDDDVNRLVLAGPGSGKTRVIVHRIAYLLRVRRV
PANAIVALTFNRHAANEIRRRLLSLVGADAYGVSVMTYHSMAMRLTGTRFERRDVVDEGA
LKQVLEDAVELLEGKGTADGEDDLREQLLRGYRYILVDEYQDIDALQYRLVSALAGRQSS
EEGRLCILAVGDDDQNIYAWRDTNNRYIERFREDYSAATSYLVENYRSTQRIIAAANHLV
GNNPGRLKASYPIRINRERQSDPLGGQWQALDPGRSGRVARLAIDPSDRAVGNLQAQAAI
GELKRLLALEEGSWSGCAILARTHQYLWPVQALCELAGVPYFLASDKDSALPITRQRDFV
AVVDRLREINEALSAAMAWQQVSAGVSESWRSFFQEAFTQLQVELGECQLNSAAIVDWLY
DYAREMRQQAKSGLYLGTVHSAKGLEFRHVVVLDGGWSVQAEGLNDERRLYYVGMTRAEQ
TLTLCEFSAVNPFSGSLLAEIAQQIFTGDYNSALERRYLQLSLKDIDIGFAGRSPVTDPI
HEALRSLEPGATLKLEQRGERYVILDDHGRVVGRTSQSFRLDLEVEYCEVAGVVVRFLED
SEEQYRSLQKCERWTIVIPRVCGVPSH
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagttccccaacccaagagcttggtcatcgatctggaggtcgctcccggaaag
gaggggcatccagatcgtatctttaagatcggggcagcgcggcctgatctcggtgtcgag
cttgatcgtaaggtctcgaaaaatctccccgagattcttgctgaagtcgatgcgctgtcc
gatggtgctggctttcttctggggcataacgtcatcgaacatgacttgcccatcctcaag
cagcaggcacctgcgctcgctctgcattctctgccagtcatcgacaccttaagactctcc
cctctggcgtttccgcagaacccctatcaccggctggtcaaggattacaaactcatccga
gacagcctcaactcgccgcttgcagactgtcgttcgacgctggttttgttcagagatcag
cgagatgcatttgcgcagttgaatgagaccaatcgtgctgagctactctgctaccaggca
ttgcttgctccaagcataaagagtgatctgggatcttttttcgcttcgctaacggggcag
actgcagttccgatttcggatctgcagcggctcattcccagtctgttggcggaaaccgat
ccatcattggatcgtgatctcaaggtatgtagagctcgactggaagctctcctggctgag
gaccttgagcagacggatttgcatctgcccttggcttatgcccttgcgtggttgagggtg
tcggggggcaactctgttcttgcgccttgggtgcggcatcagttctctgctgttgggcga
ttgattactgagctccgggatgttccctgcggccgttcagactgccgctactgctgcacg
acccacgatccgcgccatgagctgaagcgctacttcggctttgctgatttccgctacgaa
cgccccggccaaagcctgcaacacgatgtggttctcgcaggcatgcagggcagacatgtg
ctcgctatcctggcaaccggtggtggtaaatcgctgtgttaccaactgccggcgctgaat
cgttttcatcgcaacggcagcctgaccatcatcatttcgcctctgcagtcgctgatgaag
gatcaggttgacgggcttcttgagcgaaatgtgcagtgtgctgcgacgctcaatggcctg
ctgaccatgcctgagcgtgctgatgtgctggagaaggtccagatgggcgatgtcggcatt
ctgctggtatctcctgagcagttccgcaacaaggctttccggcgtgcgatacgccagcgc
cagatcggcgcttggattttcgatgaggcccactgcttgtcgaagtggggcaacgatttc
cgtccagattacatgtacgcctcgcgcttcattcgcgagcacacaggcgatcaaccccta
gcgccaattggctgcttcactgcaacggctaagccggatgtgttggctgatatccgtgat
catttcaaggaaggcctcggaattgagtttgatcagttcctggggactcatgagcggacg
aatcttagctttgaagtgctgccctgcagtcgtggcgagaaatggcccagaacccatcaa
ttgcttgaggatcacctcggcggccaggacggtggtgcggtcgttttcgttgcaagtcgc
aagggcgctgaagagctttcagagtttctagtcgggcagggatggccgtgccgccatttc
cacgccgggattgaacccaatgacaagaaggatatccaggacgacttcaaggctgggcgg
ctccgcatcatcgttgccaccaatgcctttggcatgggcgtcgacaagtccgatatccgc
ctggtagttcacgcagacattcctggttcgctggagaactaccttcaagaggcaggcagg
gcagggcgtgaccaggatgcagcacgctgtgtgctgctttatgactcgcaggatattgag
acccaatttggattgtgcgagcgctccaagctcagcctccgtgacatccaacaaattctc
cgcaagctgcgtttcgagtatgccagacgtaagggcggtgagctggttatcaccgccggc
gagattctcatggatgagaccgtcgagacctcgttcgacgctgacgacagtgatgctgaa
accaaagtggtaaccgcggttgcctggctggagcgggggcaatacctcaagcgagaggaa
aacagtacacagatttttccggcgcgcctgagtctgagcgaagcggacgccgagcagcgt
ttgctcaaggccaatctgtcggagcggcgccgtgaagagttcggcgcaattctaaaatac
ctctaccaggccgacgccgatgagcgggtgaatacggacaatctgatgtcgctcaccagc
ctgacttctgaggaagttgttagcaccctcaagcagatggaggagctgggcctactcgtc
aacgacacccaactgaccgtattgctacgtcacggcgtggtggacgcctccattcagcgc
ctggagcagaccctggcattagagggaacgctattcgaggtactcagcgagctggcgcca
gatgctgaggatggtagttggcaggatctcaatctcgcggcactgacggcggggctcaaa
gccagactagagcacgacgatgtcatcccgttgcaagtgcttcgcctgctccgcagcctc
tctcaagatcgtgaaagcaacagccagccacgcagcagttttgagctaaagcaggtcaat
cacgactacatcaagctgaaagttcaaggtaagtacagctggtcgcagattgaacgtttt
ggtgaaaagcgccgagtcattgccagcaagctgcttcaattcttgatcggaaagctggct
ccggcctccaagggcaaagatctgatggtgcagtccaccttcggtgagctagtgggtgtg
atcgagtcggatctggagctctcacaggtcatcccccccaaccagcgtcagcgagcaatt
gagcatgtgctgttgtacctgcacaagcaggaggtgctgacgctcaaccacgggatgact
gtgatgcgtcgagcaatgaccattgaggtaaacgcagacaagaagggcagctacctcaaa
gacgattacctgcgtctcgatgagcattacagcgaaaagcgtatccaggtccatgtgatg
cgtgaatatgccgaggtcgcgctcggcgctatggcgagtgcgctggagctggtgctgcac
tatttcacggactcaaaagatgccttcttgcagcgctatttctctggccgcgaagaggtg
cttaagcatgccaccagtgaagagtcctggagatccatcgttgaggatctgagcactcaa
cagcgactcattgtggtcgatgacgacgacgttaatcgcttggtgttggcagggccaggg
tctggcaaaactcgcgtaatcgttcaccgtattgcgtacctgctgcgtgttcgacgggtt
cctgccaatgcaattgtggcgttgaccttcaatcggcatgcggccaatgaaatacggcgg
cgacttttgagccttgtcggagctgatgcctacggcgtcagcgtcatgacctaccacagc
atggccatgcgactgaccggcactcgttttgagcgtagggatgttgtcgacgagggggct
cttaaacaggttctggaggacgctgttgagcttttggagggcaagggaacagccgatgga
gaggacgacctgcgagagcagttgttgcgtggctaccgctacatcctggttgatgaatac
caagacatcgatgccctgcaataccgtttggtgagtgcgcttgccggtagacaatccagt
gaggaagggcgtttgtgcattctggcggtaggtgatgatgatcagaacatctacgcctgg
cgcgataccaacaaccgctacattgagcgctttcgcgaggattactccgctgctaccagc
tacctcgttgagaactatcgatcgactcagcgcatcattgctgcggccaatcacctggtt
ggcaacaaccctgggcgcctgaaagcgtcctatcccatccgaatcaaccgggagcgccag
tcagatcctctcggggggcagtggcaggcgcttgatccaggtcgctctggacgggttgca
cgattggcaattgatcccagcgatagagctgtcggcaaccttcaggcgcaggctgctata
ggtgaactcaagcgactgctggcgctggaagagggtagctggagtggatgcgccattctt
gcacgcactcatcagtatctgtggccagtccaggcgctttgcgagcttgccggcgttccg
tactttctggcctcggataaagacagtgcgctgcccatcactcggcagcgtgatttcgtg
gctgttgttgatcggcttcgagaaatcaacgaggcgctttcggctgctatggcgtggcag
caggtgtctgctggggtgagtgagagctggcgtagctttttccaggaggcttttacccaa
ttacaggtcgagctgggtgagtgccagctcaacagtgctgcaatcgtggactggctctat
gactacgcacgagagatgcggcagcaggccaagagtggcctgtatctaggcacggttcat
tcagcgaaaggcctcgaattcaggcatgtcgttgtgcttgatggcggctggagtgtgcag
gctgaggggcttaacgatgagcgccggttgtactacgtaggtatgacgcgtgcagagcag
acgctgacgctgtgtgagttcagcgcagtgaatccattcagtggaagtctgttggctgag
atcgcgcagcagatctttaccggcgattacaactcagcattggagcggcgttatctgcag
ctcagtttgaaggacatcgacattggttttgccggacgtagccctgtaacagaccctatc
catgaggcactgaggtccctggagccgggggcgacgctgaagcttgagcagcgaggcgag
cgttatgtgattctggacgaccatggtcgggttgtcgggcggacttctcagtcctttagg
ctggatcttgaggttgaatactgcgaggttgcgggtgtggtggttcggttcctagaggac
agcgaggagcagtatcggtctctgcagaaatgcgagcgctggacgatcgttatcccaagg
gtttgtggagtacctagccactga
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integrated database retrieval system
