Pseudomonas triclosanedens: OU419_19460
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Entry
OU419_19460 CDS
T09689
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU419_19460 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrl03019
]
OU419_19460 (rne)
03009 Ribosome biogenesis [BR:
ptrl03009
]
OU419_19460 (rne)
Enzymes [BR:
ptrl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OU419_19460 (rne)
Messenger RNA biogenesis [BR:
ptrl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OU419_19460 (rne)
Ribosome biogenesis [BR:
ptrl03009
]
Prokaryotic type
rRNA processing factors
OU419_19460 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WAI47937
LinkDB
All DBs
Position
4193865..4196963
Genome browser
AA seq
1032 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GAERHGFLPLKEISREYFKKNPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNVPGDMGLIVRTAGLGRSSEELQW
DLDYLLQLWGAIKEASGERSGPFLIYQESNVIIRAIRDYLRQDIGEVLIDSLDAQEEALN
FIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHF
EVQRLRDDSPELLAGQSSYEMAHIEHEEVQPISSTRTLVRQEAAVKTVSPQAPAPQQTAP
APVEPPKPMPEPSLFQGLVKSLVSLFAGSKPEQPQAAAEKPATERSEGQGERRNGRQQNR
RRDGGRRDDERKERGERRRDERGERTERPAREERQPREDRAERQPREERQPREERAERQP
REERQPREERAERQPREERQPREERAERQPREERQPREERGERPAREERQPREERRERAE
RQPREERQPREDRQARDAAALEAEELPNEELLDQQDEQEGADGERPRRRSRGQRRRSNRR
ERQREAGVDGVAGEEGSETEQSTEGTAAAVAVVAATAAVAAEATVEQQPAVEAAVEAQPL
ESGVVEAVRTESALEQTIEFLAKPETVEPVAQVEASETVVEAVSAAAEEPAPAAETVLET
VVAQPVEEPKVEAPAEVEAPAAAAEEAAAPAIPANATGRASNDPRERRRQERLAREAAAA
AAAAPQVEQAPVAEVAVEKAAEAEVVVEPAAEAAATEVVNEAEVAEQAKQPADDLAEKTE
ETEGTVVEKHHN
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcaacccgaggagttgcgtgtagcgctggtagac
ggccaacgcctgttcgacctggacatcgagtccggcgcgcgcgagcagaagaaggccaat
atctacaagggccgcatcacccgcatcgaacccagcctcgaagccgcgttcgtcgacttc
ggcgccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaag
aaccccgaaggccgcatcaatatcaaggatgtgctcagcgagggacaggaagtcatcgtc
caggtcgagaaagaggagcgtggcaataagggcgcggccctgaccaccttcatcagcctc
gccggccgttacctggtgctgatgccgaacaatcctcgtgccggcggcatttcccgccgc
atcgagggcgaggagcgtaacgaactgcgtgaggccctcaacggcctgaacgttcccggc
gacatgggccttatcgtccgcaccgccggcctgggccgcagctccgaagagctgcaatgg
gacctggactacctgctgcagttgtggggcgccatcaaggaagcctccggcgagcgtagc
ggtccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtactgatcgacagcctcgacgcccaggaagaagcccttaac
ttcatccgtcaggtcatgccgcaatacgcgagcaaggtgaagctctatcaggacagcgtg
ccgctgttcaatcgcttccagatcgagagccagatcgagaccgccttccagcgcgaagtg
aagctgccgtccggcggctccatcgtgatcgacccgaccgaagccctggtttccatcgac
atcaactcggcccgcgccaccaaaggcggcgacatcgaggaaaccgcgctgcagaccaac
ctggaggcggccgaggaaatcgcccgccaactgcgcctgcgtgacatcggcggcctgatc
gtcatcgatttcatcgacatgaccccggcgaagaaccaacgcgccgtggaagagcgcgtt
cgcgaagccctcgaggctgaccgcgcccgcgtccaggtcggccgcatctctcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgtccgtccctcggcgagaccagcggcattgtc
tgcccgcgctgcaacggccaaggcatcatccgcgacgtcgaatccctgtcgctggcaatc
ctgcgcctgatcgaagaagaagccctgaaggatcgcaccgccgaagttcgcgcccgcgta
cctttccaggtggcagccttcctgctcaacgagaagcgcaacgccatcaccaagatcgag
ctgcgcacccgcgcgcgcatcttcatcctgccggacgaccatctggaaactccgcacttc
gaagtacagcgcctgcgtgacgacagccccgagctgctggctggccagtccagctacgag
atggcccacatcgagcacgaggaagtccagccgatcagctccacccgaaccctggttcgc
caggaagcggcagtgaagaccgtttctccgcaagcccccgctccccagcagaccgctccg
gcgcctgtcgagccgcccaagccgatgccggaaccgagcctgttccagggcttggtgaag
tcgctggtcagcttgttcgctggtagcaagccggagcagccgcaagccgccgccgagaag
cccgccaccgagcgtagcgaaggccagggcgagcgtcgcaacggccgccagcagaaccgt
cgtcgcgacggtggtcgccgcgatgacgagcgcaaggagcgtggcgaacgtcgccgtgac
gagcgtggcgaacgtactgagcgtcccgcccgcgaagagcgccagccgcgtgaagatcgt
gcagaacgtcaaccgcgtgaagaacgtcagccccgcgaggagcgtgcagagcgtcaaccg
cgcgaagaacgccagccgcgtgaagagcgcgccgagcgtcagccccgcgaggagcgccag
ccgcgtgaagaacgtgccgagcgtcaaccgcgtgaagaacgccagccgcgtgaagagcgt
ggcgagcgccctgcccgcgaagagcgccagccgcgtgaggagcgccgcgagcgcgccgaa
cgtcagccgcgtgaagagcgccagccgcgcgaggaccgtcaggcccgcgatgctgccgcc
ttggaagccgaagaactgccgaacgaggaactgctggaccagcaggacgagcaggaaggc
gccgatggcgagcgtccgcgccgccgttcccgtggccagcgccgccgcagcaaccgtcgt
gaacgtcagcgtgaggctggtgtagatggcgtagctggcgaagaaggcagcgagaccgag
cagagcaccgagggtacggccgccgccgtagcagtcgttgccgcaaccgccgccgttgct
gctgaagctaccgtcgagcagcagcctgctgtcgaagctgcggttgaagcccagccgctg
gagtcgggcgtcgtcgaagccgttcgcaccgagagcgccctggaacagaccatcgagttc
ctggccaagcccgagactgtagagccggtagcgcaggtcgaggccagcgaaaccgtggtt
gaagcagtttccgctgccgctgaagaacctgccccggccgccgaaaccgtgctcgaaacc
gtcgtcgctcagccggtcgaagagcccaaggtagaagcccctgcagaagtcgaagcacca
gccgctgctgccgaagaggcagcagcacctgccatcccggccaacgctactggccgcgcc
tccaacgacccgcgtgaacgtcgtcgccaggagcgtctggcccgtgaagcagctgccgca
gccgcagccgctccgcaggtagagcaagctccggtcgccgaagtcgcggtcgaaaaagcc
gctgaggccgaagttgtggtcgagccggctgcggaagccgccgcaactgaagtggtgaac
gaagccgaagttgcagagcaagccaagcaaccggctgacgatctggctgagaagaccgag
gaaacggaaggtactgtggtggaaaaacaccacaactga
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