Pseudomonas triclosanedens: OU419_20980
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Entry
OU419_20980 CDS
T09689
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ptrl
Pseudomonas triclosanedens
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptrl03009
]
OU419_20980 (rlmD)
Enzymes [BR:
ptrl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OU419_20980 (rlmD)
Ribosome biogenesis [BR:
ptrl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OU419_20980 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
Cons_hypoth95
Methyltransf_11
MTS
Methyltransf_23
Methyltransf_15
Methyltr_RsmB-F
TRM5-TYW2_MTfase
RrnaAD
Ubie_methyltran
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
WAI48217
LinkDB
All DBs
Position
complement(4532466..4533824)
Genome browser
AA seq
452 aa
AA seq
DB search
MAKQRSGLRFQPSGGARSPAVPVGKKQRLAIERLAHDGRGIAHVDGRTWFVTGALPGESV
EARVLSARSQVIEARSERILTAAENRRAEPCPVAGTCGGCSLQHLPHAEQLALKQRTLAE
QLERFSGIAPQAWAAPLVGPEFGYRRRARIAVRWDVRSKRLDVGFRAVASQAIVAFDDCL
VLVPALQSIARELPDLLRGFAKPQALGHVELFHGTASALLLRHVEPLADSDLARLLEFCS
ARDVQLWLQGDGEPAAHPGAQHGGLGYRLEAWDLTLAYQPGDFVQVNEPVNDAMVAQALD
WLQPKADERVLDLFCGLGNFALPLARQVREVVGVEGVQAMVDRAAANARANGLANTRFHQ
ADLSKPLAGASWAAEDFTAVLLDPPRDGAFEAARQMRALGAERVLYVSCNPATLARDAGE
LARQGYRLTRAGILDMFPQTAHVEAMALFEAD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcagagatccggcctgcgcttccagcccagcggcggagcacggagcccggcg
gtgccggtgggcaagaagcaacgcctggcgatcgagcgcctggcacatgatggacgcggg
atcgcccatgtcgacggtcgtacctggttcgtaaccggtgccttgccgggcgagtcggtg
gaagcccgggtgctgtccgcccgcagccaggtgatcgaggcgcgcagcgagcgcattctc
acggccgccgaaaaccgccgcgccgagccctgcccggtggccggcacctgcggcggttgc
agcctgcagcatctgccccatgcagaacaactggcgctcaagcagcgcaccctcgccgaa
caactggaacgcttctccggcatcgccccgcaagcctgggctgcgccgctggtcggcccg
gagttcggctaccgccgccgcgcgcgcatcgccgtgcgctgggatgtcaggagcaagcgc
ctggacgttggctttcgcgccgtcgccagccaggccatcgtcgccttcgacgactgcctg
gtgctggtgcccgcgttgcaatccattgcccgtgaactgcccgacctgctgcgtggcttc
gccaagccgcaggccctgggccatgtcgagctgttccacggcaccgccagcgccttgctg
ctgcgccatgtagaacctttggccgatagcgacctggcgcgactgctggaattctgttcg
gcacgcgatgtgcaactgtggttgcagggcgacggagaaccggcagcgcatccaggtgcg
cagcatggcgggctcggttaccggctcgaagcctgggacctgacgctggcctaccagccg
ggcgacttcgtccaggtcaacgaaccggtcaacgacgcgatggtcgcgcaggcgctggac
tggctgcagcccaaggccgacgagcgcgtgctggacctgttctgcggcctgggcaacttc
gccctgccgctggcgcgccaggtgcgcgaagtggtcggggtagagggcgtgcaggcgatg
gtagaccgcgccgcagccaatgcccgggccaatggcttggcgaatactcggttccaccag
gcggacctttcgaaaccgcttgccggcgcctcctgggcggcggaggatttcaccgccgtg
ctgctcgaccctccgcgagacggagccttcgaagcggcgcggcagatgcgtgcactgggc
gcggagcgggtactctatgtttcctgcaacccggcgaccctggcgcgcgatgcgggcgaa
ctggccagacaaggctatcgcctgacgcgcgccggcatcctcgacatgttcccgcagacg
gcgcatgtggaggccatggctttgttcgaggcagactag
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