Pseudomonas triclosanedens: OU419_25575
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Entry
OU419_25575 CDS
T09689
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU419_25575 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrl03019
]
OU419_25575 (rnr)
03016 Transfer RNA biogenesis [BR:
ptrl03016
]
OU419_25575 (rnr)
Enzymes [BR:
ptrl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OU419_25575 (rnr)
Messenger RNA biogenesis [BR:
ptrl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OU419_25575 (rnr)
Transfer RNA biogenesis [BR:
ptrl03016
]
Prokaryotic type
tRNA degradation factors
OU419_25575 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
MCM5_C
HTH_20
AbiEi_4
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
WAI49079
UniProt:
A0ABY6ZWA5
LinkDB
All DBs
Position
complement(5494378..5497119)
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AA seq
913 aa
AA seq
DB search
MADWQNLDPEAAREAEKYDNPIPSRELILAHLAERGAPATRSQLLDEFGLSGEESEEALR
RRLRAMERDGQLIYTRRGAYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFLSPTQMR
LVFDGDRALARVSGFDRRGRREGAIVEVVERAHETIVGRYFDESGIGTVVADNPKIQQEV
LIPPGKAGKARHNQFVQVRIDVWPSVHRQAQGEVVEVLGDYMAPGMEIEVALRSYDIPHT
WPEAVEKEAAKLKPEVLEKDKEKRVDLRTLPFVTIDGEDARDFDDAVYAEKRKGGGWKLF
VAIADVSHYVKVGSALDEEAAKRGNSVYFPERVIPMLPEILSNGLCSLNPLVDRLAMVCE
MNLSKAGKMTDYQFYEAVIHSHARLTYTKVSQYLETPDSPEGQRLKEQLPAVVPHLNTLY
DLYKVLVGARHVRGAIDFETQETRIVFGADRKISEIRPTQRNDAHKLIEECMLAANVATA
KFLEKHAIPALYRVHDGPPQEKLNNLRQFLGELGLTLYRGKGDPTPADYQKLLESIQGRP
DLQLIQTVMLRSLSQAVYSPENAGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRCLIRSKT
ASEHVQRVGAASMPKARIYPYDEARLAQLGEQCSMTERRADEATRDVTNWLKCEFMRERV
GETFPGVITAVTGFGIFVELSDIYVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLG
DTVEVVVARVDLDERKIDFELSDNVLSAPIGRKKRGEKAEPVAKGKVAKGGAAKGAATKE
KPARARRQVADDPFFAPDVAVVPSHKPRKRKVGVVQALPSVAPEMLAKAEEMLGNTDVRK
SREVKKALLEEARGGGSKPAAGKGKGALVAGKPRKPSKQKARSAKPTKHRKGSSAPKAGG
TGGAPASKRKAKK
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaaacctcgatcccgaggccgcccgcgaggcggaaaaatacgacaac
cccatccccagccgtgaactcatcctggcacatctcgccgaacgcggcgcgcccgcaacg
cggagccagttgctcgatgagttcggcctctccggcgaagagtcggaagaagcgttgcgc
cgccgactgcgcgccatggagcgcgatggccagcttatctatacccgccgaggcgcctat
gctccggtggacaagctcgacctgatcctcggccgcatcgccggtcatcgtgatggattc
ggcttcctgattcccgatgatggaagcgacgacctgttcctcagtccgacgcagatgcgc
ctggtattcgacggcgaccgcgccttggcgcgcgtgtccggcttcgatcgccgcggtcgc
cgcgaaggggcgatagtggaagtggtcgagcgtgcccacgaaaccattgtcggccgttac
ttcgatgagagcggcatcggcacggtggtggcggacaatccgaagattcagcaggaagtg
ctgatcccgccgggtaaggccggcaaggccaggcacaaccagttcgtccaggtgcgcatc
gacgtgtggccgagcgtgcatcgccaggctcagggcgaagtggtggaagttctcggcgac
tacatggcgccaggcatggaaatcgaagtcgcgctgcgtagctacgacattcctcacacc
tggcccgaggccgtggaaaaggaagcggccaagctcaagcccgaagtgctggaaaaggac
aaggagaagcgcgtcgacctgcgtaccctgccattcgttaccatcgacggcgaagatgcc
cgcgacttcgacgacgcggtctacgccgagaaacgcaagggcggcggctggaagctgttc
gtcgccatcgccgatgtctctcattatgtgaaggtcggttcggcgctggatgaagaggcg
gccaagcgcggcaactcggtgtatttccccgagcgcgtgatcccgatgctgccggagatt
ctctccaacggcctgtgctccctgaatccgttggtcgatcgcctggccatggtctgcgag
atgaatctctccaaggccggcaaaatgaccgactaccaattctacgaggcggtcattcat
tcccacgcgcgcctgacctacaccaaggtcagccagtacctggaaaccccggacagtccc
gagggtcagcgtctgaaggaacaactgccggcggtcgtgccgcacctcaatacgctctat
gacctgtacaaggtcctggtcggcgcgcgccacgtgcgcggtgccattgacttcgagact
caggaaacccgcatcgtattcggcgcggaccgcaaaatctcggaaatccgtccgacccag
cgcaacgatgcgcacaagctgatcgaggagtgcatgctggcggccaacgtcgccaccgcc
aaattcctggagaagcatgcgatcccggcgttgtaccgcgtccacgatggcccgccgcag
gaaaagctgaacaatctgcgtcagttcctcggcgagctggggctgaccctgtatcgcggc
aagggcgatccgaccccggcggactaccagaagctactggagtccatccagggccgcccg
gacctgcaactgatccagaccgtgatgctgcgctccctgagccaggcggtgtacagcccg
gagaacgccggccacttcggcctgaactacgaggcctacacccatttcacctcgccgatc
cgtcgctacccggacttgctgacccatcgcgcgatccgttgcctgattcgctccaagacg
gcatccgagcacgtgcagcgcgtcggtgccgccagcatgcccaaggcgcgcatctatccg
tacgacgaagcccgcctggcgcaattgggcgagcagtgctcgatgactgagcgccgcgcc
gacgaggcgacacgggacgtcaccaactggctgaagtgcgagttcatgcgtgagcgcgtg
ggcgagaccttcccgggggtgattaccgcggtgaccggtttcggcatctttgtcgagctg
agcgatatctatgtggaaggcctggtgcacgtcaccgcgctgcctggcgactactaccat
ttcgatgccgtgcaccatcgcctcagtggcgagcgcaccggtcgcagcttccgcctcggt
gacaccgtagaggtcgtggtggcgcgcgtcgacctggatgagcgcaagattgactttgaa
ctctccgataacgtgctcagcgcgcccatcggtcgcaagaagcgtggcgagaaggctgag
ccggttgccaagggcaaagtggccaagggcggggcggccaagggggccgctaccaaggag
aagccagccagggcgcgtcgccaggtagcggacgatccgttcttcgcgcctgacgtggcc
gtggtgccttcgcacaaaccgcgcaagcgcaaggtcggcgtggtacaggcgttgccgtct
gtagccccggaaatgctcgccaaggccgaggaaatgctcggcaacaccgatgtgcgcaag
agtcgcgaagtgaagaaggcgctgctcgaggaagccaggggcggcgggagcaagccggcg
gctggcaagggcaagggcgcgctcgtcgcgggcaagccgcgcaaaccttcgaaacagaaa
gcccggtccgccaagccgaccaagcaccgcaagggttcgtccgcgcccaaggcgggtggc
accggtggcgctccggccagcaagcgtaaggcgaagaaatga
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