Paraburkholderia tropica: G5S35_05665
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Entry
G5S35_05665 CDS
T07044
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptro
Paraburkholderia tropica
Brite
KEGG Orthology (KO) [BR:
ptro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptro03019
]
G5S35_05665 (hrpA)
Enzymes [BR:
ptro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G5S35_05665 (hrpA)
Messenger RNA biogenesis [BR:
ptro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G5S35_05665 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
T2SSE
NACHT
Gluconate_2-dh3
PhoH
SRP54
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QNB12808
LinkDB
All DBs
Position
A:1259039..1263352
Genome browser
AA seq
1437 aa
AA seq
DB search
MRDDRQAARAPARDQSRRAPQGESRTDEARNAAHKPPRAPQSGEASRGGDRQPRDQREAR
EPREPRAERTETPRDPQAAAQRKPANAARPAKPQTDRPQTAREDRPPRPEGERKERRERA
PRANVTPNPIPPITFPEALPVSGRREEIARAIANNQVVIVSGETGSGKTTQLPKIALSLG
RGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLAAGASVKLMT
DGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLGYLKEILPRRPDLKLIVTSATIDA
DRFARHFGSDEKPAPVIEVSGRLYPVEVRYRPVQEDSPAVKNAQGSAPAKKSQRDTDRDL
MDAIVDAVDELCREGSGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAQEQER
VFKASNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIESISQAAAN
QRAGRCGRVADGVCIRLYEESDFVARPRFSDPEILRSSLAAVILRMKSLHLTAIETFPFI
EPPPGRAIADGYQLLNELGAVDDDNALTTLGRELARLPLDPRVGRMILAARDEQSLREVL
VIASALSVQDPRDRPIEAQEQADQAHRRFADERSEFLQWLKIWTWFEDAVAHKKSNKQLV
DACRANFLSHLRLREWRDVHSQLLTVVREHGWRINQSDATYEQIHHALLTGLLGNIGLKA
DDEPHYLGARSIKFHLWPGSALVKKAGRWVVAAELVETSRLYARCIAKIEPEWLEKVGAH
LLKKSLSEPHWEKRAAQVSAFERGVLYGLPVYQRRRVAFGKQDPARARELFIRGALVEGE
FDTKLPFFAHNRKLLADIEQLEHKSRRQDVLVDDELIFGFYDQAIPEGMYSGASFERWYR
DEVKKSGQSEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRMTMSGVAMALTYHFEPGSPRD
GVTLAVPLYALNQVDARRCEWLVPGMLKEKAQLLLKSLPQKLRRHCVPLPEYAAGFADRV
SGERFGAGGLLEALIIDVREQKQLQLKSADFKLETLPAHLFMNFKVIDEHGRQLAMGRNL
AQLRAELGAQAQQQFQKLASATALAALETHAQGAKDAKDASGGAAAGAVPNASAPKKANA
PHTPASSDASPATALYENLTTWNFGKLPELLEIRRGGQTLFGYPALVDRATHCDVEVFDS
PEEAARIHRAGLRRLFALQLREPIRYLERNLPGLREMAMQFMARATQEELRDQLVELALD
RACLQDPLPDDEASFHARKDEGRGRLSLLAQEIARLVGQILAEFASVSKKLVAAKAFGAP
AADMQAQLDALIGKRFILETPYAQLVHFPRYLKGIALRIDKLRADPARDARQASEFQPLA
QQYQRALSQRGGVFDARLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
attcgcgacgatcgccaggcggctcgcgcgcccgcgcgtgatcaatctcggcgagcgccg
caaggcgagtcgcggacggacgaagcgcgcaacgcggcgcataagccgccgcgtgcgccg
cagtcgggcgaggcttcgcgcggcggcgatcgtcagccgcgcgatcaacgtgaagcgcgc
gaaccccgcgaaccccgcgccgagcgcacggaaaccccgcgtgacccgcaagccgccgct
cagcgcaagccggccaacgccgcgcgtccggccaaaccgcaaaccgatcgcccgcagacg
gcccgcgaagaccgcccgccgcgtcccgaaggcgagcgcaaggagcgccgcgaacgcgcg
ccgcgcgcgaacgtcacgccgaatccgatcccgccgatcacctttcccgaggcgctgccg
gtctccggccgccgcgaggaaatcgcacgcgcgatcgcgaacaatcaggtcgtgatcgtc
agcggcgaaaccggttcgggcaagaccacgcagttgccgaagatcgcgctgtcgctcggg
cgcggtctcggcgcgggcggctccggcctgatcggccacacgcagccgcgccggatcgcg
gcgtcggcgaccggtcggcgtatcgccgaggaactgggcacgccgttcggcgaagtggtc
ggctacaaggtgcgcttcacggacaatctggcggcgggcgcgtcggtcaagctgatgacc
gacggcattctgctcgccgagacccagaccgatccgctgctcaaggcctacgacacgatc
atcatcgacgaggcgcacgaacgcagcctcaacatcgatttcctgctcggctatctgaag
gaaatcctgccgcgccggcccgatctcaagctgatcgtgacctcggcgaccatcgacgcg
gatcgtttcgcgcgccatttcggcagcgacgaaaagcccgcgccggtgatcgaggtgagc
gggcgtctgtatccggtcgaggtgcgctatcgcccggtgcaggaagacagtccggccgtg
aagaacgcacagggcagtgcgcctgcgaagaaatcgcagcgcgacaccgaccgcgatctg
atggacgcgatcgtcgacgccgtcgacgaactctgccgcgaaggctcgggcgacgtgctc
gtgttcctgcccggcgagcgcgagattcgcgacgccgccgaagcgctgcgcaagcatcat
ccgccgcacacggaaatcctgccgctgttcgcgcggctctcggcgcaggaacaggagcgc
gtgttcaaggcgtcgaacgcgcgccgcatcgtgctcgcgaccaacgtggccgaaacctcg
ctgacggtgcctggcatccgctacgtggtggacacgggcctcgcgcgcgtgaagcgctat
tcgtaccgcaacaaggtcgagcagttgcagatcgagtcgatctcgcaggccgccgcgaat
cagcgcgcgggccgttgcgggcgcgtcgccgacggcgtgtgcatccggctttacgaagag
tccgatttcgtcgcgcggccgcgtttttccgatccggaaattctgcgctcgtcgctggcg
gccgtgattctgcgcatgaagtcgctgcatctcacggcgatcgaaaccttcccgttcatc
gagccgccgccgggccgcgcgatcgcggacggctatcagctgctcaacgaactcggcgcg
gtcgacgacgacaacgcgctgaccacgctcggccgcgagctggcgcggctgccgctcgat
ccgcgcgtcggccgcatgattctggccgcgcgcgacgaacaatcgctgcgcgaagtgctg
gtgatcgcgagcgcgctgtcggtgcaggacccgcgcgaccggccgatcgaagcgcaggag
caggccgatcaggcgcatcgtcgtttcgccgacgagcgctcggaattcctccagtggctc
aagatctggacgtggttcgaagacgccgtcgcgcacaagaagtcgaacaagcagctcgtc
gatgcgtgccgcgcgaacttcctttcgcatctgcgtctgcgcgaatggcgcgacgtgcat
tcgcaactgctcacggtcgtgcgcgagcacggctggcgcatcaaccagtccgacgcgacc
tacgagcaaatccatcatgcgctgctgacgggcttgctcggcaacatcggtctcaaggcc
gacgacgaaccgcattacctcggcgcgcgcagcatcaagttccatctgtggcccggttcg
gcgctcgtgaagaaagcggggcgctgggtcgtggcggcggaactcgtcgaaacgagccgt
ctgtacgcgcgctgcatcgcgaagatcgagcccgaatggctcgaaaaagtgggcgcgcat
ctgctcaagaagtcgctctccgagccgcattgggagaagcgcgcggcgcaggtcagcgcg
ttcgagcgcggcgtgctgtacggcttgccggtgtatcagcgacgccgcgtggcgttcggc
aagcaggacccggcgcgcgcgcgcgagttgttcattcgcggcgcgctggtcgagggcgag
ttcgacacaaagctgccgttcttcgcgcacaaccgcaaactgctcgccgacatcgagcaa
ctcgaacacaagtcgcgccgccaggacgtgctcgtcgacgacgaactgatcttcggtttc
tacgatcaggcgattcccgagggcatgtattcgggcgcgtcgttcgagcgctggtatcgc
gacgaagtgaaaaagagcggccagtccgaggacaagctgcggctgctgtatctctctcgc
gacgacctgatgcgtcacgaagcggcgggcgtgacgaccgatctgttcccgaagcgcatg
acgatgtcgggcgtggcgatggcgctcacgtatcacttcgagccgggctcgccgcgtgac
ggcgtgacgctcgcggtgccgctctacgcgctcaatcaggtcgatgcgcgccgctgcgaa
tggctcgtgccgggcatgctcaaggagaaggcgcaactgctgctgaagtccttgccgcag
aagctgcgccgccattgcgtgccgctgcccgagtacgcggccggtttcgccgatcgcgtg
agtggcgagcgcttcggcgcgggcgggctgctggaggcgctgatcatcgacgtgcgggag
cagaaacagctccagctgaagtccgcggatttcaagctggagacgctgcccgcgcatctg
ttcatgaacttcaaggtgatcgacgagcacggtcgccagctcgcgatgggccgcaatctc
gcgcagttgcgcgcggaactcggcgcgcaggcgcagcagcagttccagaagctggcgagc
gcgaccgcgctggcggcgctggaaacgcacgcgcagggcgcgaaggacgcgaaggatgca
agcggcggcgctgccgccggcgcagtgccgaacgcgagcgcgccgaagaaggccaacgcg
cctcacacgcccgcttcgagcgacgcgtcgcccgccacggcgctctacgaaaacctcacg
acctggaatttcggcaagttgcccgaactgctggaaatccgccggggcggccagacgctg
ttcggctatccggcgctcgtcgaccgcgccacgcattgcgacgtggaagtgttcgattcg
cccgaggaagcggcgcggattcatcgtgccggtctgcgtcgtctgttcgcgctgcagttg
cgcgagccgatccgctatctggagaggaatctgccgggtctgcgcgaaatggcgatgcag
ttcatggcgcgcgccacgcaggaggaattgcgcgatcagcttgtcgaactcgcgctcgat
cgcgcctgcctgcaagatccgctccccgacgacgaagcgagttttcatgcccgcaaggac
gaagggcgcggacggctttcgctgctcgcgcaggaaatcgcgcggctcgtcgggcagatt
ctggcggaattcgcgtcggtgtcgaagaagctcgtggcggcgaaggcgttcggcgcgccg
gccgccgacatgcaggcgcagctcgacgcgctcatcggcaagcgcttcattctggagacg
ccgtacgcgcagctcgtgcatttcccgcgctatctgaagggcatcgcgctacgcatcgac
aagctgcgtgccgatcccgcccgcgacgcgcgccaggcttcggaattccagccgctcgcg
cagcagtaccagcgcgcgctctcgcaacgcggcggcgtgttcgacgcgcgcctcgcggag
ttccgctggctgctcgaagaactgcggatttcgctcttcgcacaggaattgcgcacgccg
atgccggtctccgtgaagcgcctgtacaaagtgtgggaatcgatgcagcgatga
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