Paraburkholderia tropica: G5S35_28875
Help
Entry
G5S35_28875 CDS
T07044
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
ptro
Paraburkholderia tropica
Pathway
ptro00260
Glycine, serine and threonine metabolism
ptro00460
Cyanoamino acid metabolism
ptro00630
Glyoxylate and dicarboxylate metabolism
ptro00670
One carbon pool by folate
ptro00680
Methane metabolism
ptro01100
Metabolic pathways
ptro01110
Biosynthesis of secondary metabolites
ptro01120
Microbial metabolism in diverse environments
ptro01200
Carbon metabolism
ptro01230
Biosynthesis of amino acids
ptro01240
Biosynthesis of cofactors
ptro04981
Folate transport and metabolism
Module
ptro_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
ptro00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
G5S35_28875
09102 Energy metabolism
00680 Methane metabolism
G5S35_28875
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
G5S35_28875
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
G5S35_28875
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
G5S35_28875
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
G5S35_28875
Enzymes [BR:
ptro01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
G5S35_28875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
QNB15600
LinkDB
All DBs
Position
C:complement(1213000..1214244)
Genome browser
AA seq
414 aa
AA seq
DB search
MFKRAVSIANVDPELFAAIELENRRQEEHIELIASENYTSPAVMAAQGSQLTNKYAEGYP
GKRYYGGCENVDIVEQLAIDRVKALFGAEAANVQPNSGSQANQGVFFAVLKPGDTIMGMS
LAEGGHLTHGMALNMSGKWFNVVSYGLDANEDIDYDALEKRAHETKPKLIIAGASAFALR
IDFERIAKVAKAVGAYFMVDMAHYAGLIAAGVYPNPVPFADFVTTTTHKSLRGPRGGVIL
MKAEHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEAATPEFKTYQQQVVENARVLAETLV
KRGLRIVSGRTESHVMLVDLRAKNITGKAAEAVLGAAHITVNKNAIPNDPEKPFVTSGIR
LGSPAMTTRGFGVKEAERVGNLIADVLEAPNDAATIERVKAQVAELTTRFPVYS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaacgcgccgtttccatcgccaacgtcgatcccgaactcttcgccgcgatcgaa
ctcgagaaccgccgccaggaagagcacatcgagctcatcgcgtcggaaaactacacctcg
cccgccgtcatggccgcgcagggttcgcagctcaccaacaaatacgccgaaggctatccc
ggtaagcgttattacggcggctgcgaaaacgtcgatatcgtcgagcagctcgcgatcgac
cgcgtcaaggcgctgttcggcgcggaagccgccaacgtccagccgaactccggctcgcag
gccaaccagggcgtgttcttcgccgtcctgaagccgggcgacaccatcatgggcatgagc
ctcgccgaaggcggccacctcacgcacggcatggcgctcaacatgagcggcaagtggttc
aacgtcgtgagctacgggctcgatgccaacgaagacatcgactacgacgcgctcgaaaag
cgcgcgcacgaaacgaagccgaagctgatcatcgcgggcgcgtcggcgttcgcgctgcgc
atcgacttcgagcgcatcgccaaggtcgccaaggccgtcggcgcgtacttcatggtcgac
atggcgcactacgcgggcctgatcgccgcgggcgtctacccgaacccggtgccgttcgcc
gacttcgtcaccacgaccacgcacaagagcctgcgcggcccgcgcggcggcgtgatcctg
atgaaggccgagcacgaaaaggccatcaactcggcgatcttcccgggtattcagggcggt
ccgctgatgcacgtgatcgcgggcaaggccgtggcgttcaaggaagccgcgacgccggag
ttcaagacctatcagcagcaagtggtcgagaacgcgcgcgtgctggctgaaacgctggtc
aagcgcggtctgcgtatcgtttcgggccgcacggaaagccacgtgatgctggtcgatctg
cgcgcgaagaacatcaccggcaaggctgcggaagcggtgctgggcgcggcgcatatcacc
gtgaacaagaacgcgatcccgaacgatccggaaaagccgttcgtgacgagcggtatccgt
ctgggctcgccggcgatgaccacgcgcggcttcggcgtgaaggaagcggagcgcgtaggc
aacttgatcgccgacgtactcgaagccccgaacgacgccgccacgatcgagcgcgtcaaa
gcgcaggtcgccgaactgacgacgcgcttccccgtgtatagctga
DBGET
integrated database retrieval system