Polynucleobacter tropicus: DCO17_00270
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Entry
DCO17_00270 CDS
T08318
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DCO17_00270 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrp03021
]
DCO17_00270 (rpoC)
03400 DNA repair and recombination proteins [BR:
ptrp03400
]
DCO17_00270 (rpoC)
Enzymes [BR:
ptrp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DCO17_00270 (rpoC)
Transcription machinery [BR:
ptrp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DCO17_00270 (rpoC)
DNA repair and recombination proteins [BR:
ptrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DCO17_00270 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
QKM63793
UniProt:
A0A6M9Q589
LinkDB
All DBs
Position
48702..52964
Genome browser
AA seq
1420 aa
AA seq
DB search
MKALLDLFKQTQGDEQFDVIKIGLASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKFRGVICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDPGMTPEGAMKRGQIMSEDEYIAKTEEYGDGAF
TAIMGAEGIRELLRSIDIDREVETIRADLKATGSDAKIKKYAKRLKVLEAFQSSGIKPDW
MIMEVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEK
RMLQEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKSGRFRQNLLGKRVDYSGRSVIV
VGPTLKLHQCGLPKLMALELFKPFIFNKLETLGIATTIKAAKKEVESQTPIVWDILEEVI
REHPIMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QMEARTLMLASNNVLFPANGEPSIVPSQDVVLGLYYATRDKINGKGEGMVFANITEVVRA
YEAGQVELASRVAVRITEYEVVDKKAEGDARFAEKTKIYQTSVGRAILSEILPKGMSFEE
INKPLKKKEISRLINTSFRKCGLRETVIFADRLLQSGFRLATKAGISIAIDDMLIPTSKD
RIITEASTKVKEYDKQFMSGLVTNQERYNNVVDIWGAAGDQVGKAMMDELSHVDVLDRNG
KTARQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLCDVTQDLVVIEEDCGASTGVTMKALVEGGEI
IEALRDRILGRVCIGDIVHPDTQEVIVPNDTLLDEDHVDQIVALGIDEVKVRTVLSCQTR
YGLCAKCYGRDLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRALVASNIE
AKSNGSLKFSGTMRVVKNAKGEQIVISRSGEALIVDDNGRERERHKVPYGATLLLKEGAA
VKAGASLATWDPLTRPIISEYAGVARFDNVEEGVTVAKQVDEVTGLSTLVVIDGKRRSAA
SKGVRPVINLIDDKGNDVMIAGTDHPVNIGLQVGALITVKDGQKVEVGEVLARIPIESQK
TRDITGGLPRVAELFEARSPKDAAVLAKVTGTVSFGKETKGKQRLVITDMDGEANEFLIP
KEKQVLVHDGQVVNKGEMIVEGPADPHDILTLKGIEELAIYIVDEVQDVYRLQGVKINDK
HIEVIVRQMLRRVQVTDPGDTTFIPGEQVERSKLYDENDRVIAEGKRPASFDNVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKTDTLRGLKENVIIGRLIPAGTGLSYRRARKV
REQFERDRAQMIAAEEEAMASAPVEIEAEVIAPTGEADPS
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatttatttaagcaaacgcagggtgatgagcagtttgatgtcatc
aagattggcctcgcatcccctgagaaaattcgctcatggtcttttggtgaagtacgcaaa
ccagaaaccatcaactaccggacttttaagcccgagcgtgatggtttgttctgcgccaag
atttttggaccaaccaaagactacgagtgcttatgcggtaagtacaagcgcttaaagttc
cgtggcgttatctgtgagaagtgcggtgttgaagttactctcgctaaggtacgtcgtgag
cgcatgggccacattgagttggcagcccctgtagcgcatatttggttcttaaagtccctg
ccatcccgcttgggcatggttctcgatatgacattgcgagatatcgagcgcgttctttac
tttgaagcatacgtagttgtagatcctggcatgacccctgaaggcgcaatgaagcgcggt
cagatcatgtctgaagatgagtacattgctaaaactgaagagtatggtgacggtgcattt
accgccatcatgggcgcagaaggtattcgtgaactcttacgttcgattgatatcgatcgc
gaagttgagaccattcgtgcagatttgaaagcaactggtagcgatgccaagatcaagaaa
tacgctaagcgcttaaaagtgcttgaggcgttccaaagctcaggtattaagcctgactgg
atgatcatggaagtgttgccagtattgccaccagagttgcgcccattggtgccattggat
ggcggtcgcttcgctacttctgatttgaatgacctctatcgtcgtgtaattaaccgtaac
aatcgtttgaagcgtttgttggaattgcgtgcaccagaaatcatcgtgcgcaatgaaaaa
cgcatgttgcaagaagcggttgactcattgctcgacaacggtcgtcgcggtaaggctatg
acaggcgctaataagcgtcctctcaagtccttggctgagatgattaaaggtaagagcggt
cgcttccgtcaaaacttgctcggtaaacgtgttgactactctggtcgttcggtgatcgtg
gttggccctacattgaaattgcatcagtgcggcttgccaaaattgatggcgctcgagtta
ttcaaaccatttatttttaacaagcttgagactttgggcattgcaaccactatcaaggct
gcaaaaaaagaagttgaaagtcagacgccaatcgtttgggacattctcgaagaagtgatt
cgtgaacatccaatcatgttgaaccgtgcgcctacattgcaccgtcttggcattcaggct
ttcgagccaatgttgattgaaggtaaagcaattcagttgcacccattagtctgcgcggca
tttaacgcggactttgacggtgaccaaatggcggttcacgttcctttgtcgctcgaagcg
caaatggaagcacgtacattgatgttggcttcgaacaacgtattgttcccagctaacggc
gagccatctatcgttccttcgcaggacgtggtgttgggtctgtactatgcaacccgcgac
aagatcaacggcaaaggcgaaggtatggttttcgccaacattactgaagtagttcgcgca
tacgaagcgggtcaagtcgaattggcttctcgtgttgctgtgcgtattactgagtatgag
gtggtggacaagaaggcagaaggcgatgcgcgttttgctgagaagaccaagatctatcag
acatcagttggccgtgcaatcctctcagagattctgcctaagggtatgtctttcgaggaa
atcaacaagccgttgaagaaaaaagaaatctcacgtttgatcaacacttcattccgtaag
tgtggtttgcgcgagactgtcatttttgctgaccgtttgttgcagtctggtttccgcttg
gctaccaaagctggtatctcgattgctatcgacgatatgttgattccaacttctaaagac
cgcatcattactgaggcgtctaccaaggttaaggaatacgacaagcagttcatgtcaggt
ctcgtaaccaatcaagaacgttataacaatgtggttgatatttggggtgccgcaggtgac
caagttggtaaggccatgatggatgagttgtcacacgttgatgtactcgaccgtaacggt
aaaacagctcgccaagaatcctttaactccatctacatgatggcggactctggtgcgcgt
ggatctgctgcgcagattcgtcagttggctggtatgcgtggtttgatggctaagccggac
ggctccattattgaaaccccaattactgcgaacttccgtgaaggcttgaacgtattgcag
tacttcatttcaactcacggtgctcgtaagggtctagccgatactgcgttgaagacagcg
aactctggctacttaacacgtcgtttgtgtgacgttacccaagatctcgtggtaatcgaa
gaagattgcggcgcatctactggcgtaactatgaaggcgcttgttgagggcggcgaaatt
atcgaagcattgcgcgatcgtattttgggtcgtgtatgcatcggtgacatcgttcatcct
gatacacaagaagtgatcgttcctaacgatacattgcttgatgaagatcacgttgatcaa
atcgttgcattgggtatcgatgaagttaaggttcgcacagtgctttcttgccaaactcgt
tatggtttgtgcgcgaagtgctacggacgtgacttaggtcgcggtggtttggtaaacgtt
ggcgaggcagttggtgtgattgctgctcagtctatcggtgagccaggaacacagttgacc
atgcgtaccttccacatcggtggtgctgcatcacgtgctttggttgcaagcaatattgaa
gctaaatcgaacggttctttgaagttctctggcacgatgcgtgttgtgaagaatgcgaag
ggcgagcagattgtgatttcacgttctggtgaagccttgatcgttgatgacaacggtcgt
gagcgcgagcgtcataaagtgccttacggtgcaactctcttgttaaaagaaggtgcagca
gtgaaggcaggcgcaagcttggccacatgggatccattaacacgcccgattatttctgaa
tacgcaggtgttgcacgctttgacaacgttgaagaaggtgtaaccgttgctaagcaggtt
gacgaagttactggcctttccactttggtagtaattgacggtaaacgtcgttcagctgca
agcaaaggcgttcgcccagtgatcaatctgattgatgacaagggcaatgacgtgatgatc
gctggtactgatcatccagtaaacattggcctccaagtaggcgctttgattactgttaag
gatggtcagaaagtcgaagtgggtgaagtattggcacgtattccaatcgaatcccagaaa
actcgcgacattaccggtggtttgccacgcgttgcggaattgttcgaagctcgttcacca
aaagatgctgctgtattggcaaaagtgaccggtaccgtttccttcggtaaagaaaccaaa
ggtaagcaacgtttagtcattaccgatatggatggcgaagctaatgaattcttgattcca
aaagagaagcaagttcttgttcacgacggtcaagtagtgaacaagggcgagatgattgtg
gaaggccctgccgatccacatgacatcttgactctcaaaggtattgaagagttggcgatt
tacatcgttgatgaagttcaagacgtttatcgtctccagggtgtgaagattaatgacaag
cacattgaagtgatcgtgcgtcagatgttgcgtcgtgttcaggtaactgatccaggcgac
accacattcattcccggtgagcaagtagagcgttctaagctctatgacgagaatgatcgc
gtcatcgccgaaggtaagcgcccagcttcattcgacaacgtattgcttggtatcactaaa
gcatctttgtcgacagacagcttcatttcagcggcttctttccaagaaaccacccgtgta
ttgaccgaagccgcaattatgggcaagaccgataccctccgtggcctcaaggaaaacgtc
attattggtcgtctgatccctgctggtaccggcttgtcttatcgccgtgcccgcaaggtc
agagagcaattcgagcgtgatcgcgctcaaatgattgctgccgaggaagaggcaatggct
agcgcccctgtggaaatagaggctgaagtcattgctccaactggggaggctgatccaagc
taa
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integrated database retrieval system
