Polynucleobacter tropicus: DCO17_01115
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Entry
DCO17_01115 CDS
T08318
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ptrp
Polynucleobacter tropicus
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptrp03016
]
DCO17_01115
Enzymes [BR:
ptrp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DCO17_01115
Transfer RNA biogenesis [BR:
ptrp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DCO17_01115
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QKM63949
UniProt:
A0A6M9PTI1
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All DBs
Position
207248..209281
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AA seq
677 aa
AA seq
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MNLLYEEGGDIKIATVQSATGTGDAESWQATSLSGKKIKLKAKEVWLRFEKPEAQAVMDE
ALTLSKEIDLQLLWDCAPDEEFGLVDVSHEYFGDQASIPQQASLAIALQGAPVFFRRKGR
GRFQRAPLEQLQAGLAALERKQKELEQQSLWQQDLVVGIFPEALKASAKHLLFSPDKNSS
AYKALSAACTETGESPAQLMIRCGAIDSPLAYHQGMFLKAHFPNGSAHNPNVGVDQDSYD
AAIAELPRAEVQAFSIDDAGTTEIDDALSVTDLPDGGHRIGIHIAAPGLVLTRDDALDEV
ARSRMSTVYFPGDKITMLPDAVIQKFSLDEGDSRAALSVYVDIDADGVVNRETIQMRAEM
VPIAANLRLENIEHLVSDETLSGASVEYPYKKELGILWRAAKHLHSGRQEKRVANGLRAE
QLGLIDPNALARDFHFQIKNNDGVERVEITPRQRGSILDTIVAEWMIFCNSASGQLLADH
GLPGLFRTQKGWGPMRTRMQTTPGPHEGLGLDYYAWSTSPLRRYSDLVNQWQLLALAKHG
VTAKMVAPFPPRDAVLMGIAADFESSYQAYGEYQDRLEKYWCLRWIAQDETSKGVYVRHL
KEGMSRVEPIPLHLPIPEMASHPRMTRAHVKVSDVDLLQLSAAVRVLEIESVQSNGQASD
SQEEPSSGESEEDASLD
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcttatacgaagagggtggcgacatcaaaatcgccacggtgcagtctgcaacc
ggaacaggtgatgcagagtcttggcaggcaaccagtttgtctggcaaaaaaatcaagctc
aaggctaaagaggtttggttgcgctttgaaaagcctgaagctcaggccgtgatggatgag
gcgctcacgctctctaaagaaatcgatttacagttgttatgggattgcgcgccagatgaa
gaatttggattggtggatgtttcccatgaatactttggagatcaagcatccattccgcaa
caagcttcattggcaattgcattgcaaggtgcgccagtattctttcgtcgcaagggacga
ggacgcttccaaagagcgcctttagagcaacttcaggcaggcttggcggcactcgagcgc
aagcaaaaagaattagagcaacagtccctgtggcaacaagacttagtggtggggatattc
ccagaggctttaaaagcttctgccaagcatttattgttttctcctgataagaatagctct
gcatataaagccttaagcgccgcttgcacagagactggcgagtcgcctgcgcagttgatg
attcgttgtggcgcgattgactctccactggcctatcaccagggaatgtttttaaaggcc
catttcccaaatggttctgctcataatcccaatgtgggggttgatcaggattcctatgat
gcggcgatcgcagaactgcctcgtgcagaagtgcaggctttttctattgatgacgctgga
actacagagattgatgacgcgctatctgtaacggatttgccagatggtggtcatcgcatt
ggaattcatattgcagccccaggattagttctgactagggatgatgcgctagacgaagta
gcacgtagtcgtatgtctacggtttatttcccgggcgacaaaatcacgatgctgcccgac
gcggtcattcagaagttttcattggatgagggcgactctagagccgctttgtcggtctat
gtggatattgatgctgatggggtcgtaaatcgagagactattcaaatgcgcgctgaaatg
gtcccaattgcagctaatttgcgccttgaaaatattgagcatttagttagtgatgagact
ttatcgggcgcaagcgttgaatatccgtataaaaaagagttaggaattttgtggcgagct
gcaaaacacttacactctggccgccaggaaaaaagagtggctaacggattacgtgcggag
caattaggtttaattgacccaaatgctttggcaagagattttcattttcaaattaaaaat
aacgacggagttgagcgtgtggagattactccacgtcagcgcggctctattttggatacg
attgttgcggagtggatgatcttctgtaatagcgcttcaggtcaattgctggctgatcat
ggattgcccggcttatttagaacgcaaaagggctggggcccaatgcgtacccgtatgcaa
actactcccggacctcatgaaggtttaggtttggactattacgcttggtctacctctccg
ttgcgccgttactccgatttggtaaatcaatggcagttactggcgctggcaaagcatggt
gttactgccaagatggttgcaccatttcctccgcgagatgcagtgttaatgggaattgca
gcggattttgaatcttcctatcaagcgtatggtgaataccaagatcgtttggagaagtac
tggtgtctacgctggattgcgcaagatgagacctcaaaaggtgtttatgtaagacattta
aaagaggggatgtcgagagttgagcctatacctttgcatttgcctattccagagatggcc
agtcatccacgcatgaccagggcgcatgtaaaggtatctgatgtagatctattgcaattg
agtgccgctgtgagggtgttagaaatagagtcggtgcagtcaaacggtcaggcctcagat
agccaggaggagccttcgtctggggaatctgaagaagatgcgagcctggattag
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