Polynucleobacter tropicus: DCO17_02040
Help
Entry
DCO17_02040 CDS
T08318
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCO17_02040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrp03019
]
DCO17_02040
03009 Ribosome biogenesis [BR:
ptrp03009
]
DCO17_02040
Enzymes [BR:
ptrp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DCO17_02040
Messenger RNA biogenesis [BR:
ptrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DCO17_02040
Ribosome biogenesis [BR:
ptrp03009
]
Prokaryotic type
rRNA processing factors
DCO17_02040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
dnstrm_HI1420
SPATA45
Motif
Other DBs
NCBI-ProteinID:
QKM64113
UniProt:
A0A6M9Q5W9
LinkDB
All DBs
Position
complement(387011..389653)
Genome browser
AA seq
880 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKEGIDVRNASIKDALREGQEIIVQVEKEERGQKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELREAMAQLEVPEGMSIIARTAGIGRDATELQ
WDLSYLLQLWKAIDEAAKGNSAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYEQAA
AFMSVVMPDNLPRVKRYQDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIEETATRTNLEAADEIARQARLRDLGGLIVIDFIDMESSKAQKDVENR
LRDALRHDRARVQMGKISKFGLMEMSRQRLRPALSEGSHVTCPRCNGTGHIRDAESSALQ
VLRIIQEEAMKENTAAIHTQVPVEVAAFLLNEKRAEVIKIETRFKVNVLLVPNKHLETPH
YKLERLRHDDPRLDDQKASYVMAEEAARELETDTTVSKKDADVKVRPEAAVKGITPTQPA
PMAQPRAARAEKASSESSGGLFGFIKKLFSSSPAAEEKPATSGNRGRNQGRNGNNRDRNR
GRNRRGERPATNAAEGGNTEGANNRNGNNRNNNRNQGNQNGPKTEHNANRNNNQANAAAV
TPTSEAVPGSEVATGADGEERRGRGRNRRGRGRNRNERGDRGERTENGSASPEAATASAS
PFSGPPVGMAGASASMPIQNIVSSFSNAKPASQRQGRSERSSRPPREPRSEKNTSTTANA
APSPAPVAIVAASAIEVIAKPMPELPKVAFQALEETPLHSVVQSAGMIWVATDASKHADV
QTQIKAETVVQNLGRTPKPAATLPEGPMVLVETGGQEKTV
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgcaactcaacaagaagagttgcgagttgccatcgtcgat
ggtcaaaaactaatcgatatcgatatcgaagctgccggtcgcgaacagcgcaaaggcaat
atttacaaaggtgttattacccgtattgagccttcccttgaggcctgctttgttaactat
ggtgaagagcgtcatggcttcttgccatttaaggaagttgctagagcctatttcaaggaa
ggtattgatgttcgcaacgcatctattaaggatgccctacgcgaaggtcaagaaatcatt
gttcaggtagaaaaagaagagcgcggccaaaaaggcgctgctttgacctcttttatctcc
ctggctggacgctacttggtattaatgccaaacaacccacgtgggggcggcgtttctcgt
cgtattgaaggcgaagaccgtcaagaactccgtgaggcgatggctcaattagaagtacct
gaaggtatgagcatcatcgcccgtacagcaggtattggacgcgatgctaccgaactgcag
tgggacttaagttacctcctgcaactatggaaagcaattgatgaggctgctaaaggcaac
tctgctccattactcatctatctcgaatctagcttagtcattcgcgcaatccgcgattac
ttccaaccagatattggcgagatcctgattgataccgacgatatctatgagcaagctgct
gcctttatgtcagtggtcatgccggataacttgccgcgagtaaagcgctatcaagatgat
gtgccgctcttctctcgcttccaaatcgaacatcagatcgagaccgcttactcacgtacc
gttccattgccatctggcggcgcaatcgtaatcgaccacacagaagcgcttgtttctgta
gacgtcaactctgctcgcgcaacccgtggttctgatattgaagaaactgctacacgtacc
aacttagaagctgccgatgaaatcgcgcgtcaagcacgtctgcgtgacttaggtggtttg
attgtgattgacttcatcgatatggagtcgagcaaagcacagaaagatgttgagaatcgc
ttacgcgatgccctgcgtcatgaccgtgcacgcgtacaaatgggtaagatctccaaattt
ggcttgatggaaatgtcacgccaacgtttgcgccccgcactctctgaaggtagccacgta
acctgcccacgttgtaacggcactggtcatattcgtgatgctgaatcttctgcattgcaa
gtactgcgcattattcaagaagaggccatgaaagaaaacactgcggcgattcatacgcag
gttccagttgaagtagccgcattcttattaaatgaaaaacgtgctgaagtgatcaagatc
gagacacgcttcaaagtaaatgttctcttggtgcctaacaaacacctagaaactccgcat
tacaaacttgagcgcttacgccatgatgatccccgcttggatgatcagaaggctagctac
gtgatggctgaagaagctgcgcgtgaactcgagacagacaccacagtaagcaaaaaagat
gcggacgtcaaagtacgcccggaggcagctgttaagggcattaccccaacgcagccagca
ccaatggctcagccacgtgccgcacgtgcagagaaagctagctctgagagttctggtggc
ttatttggcttcatcaaaaaacttttttcctcttcaccagcggcagaagaaaagccagca
acgagcggtaaccgtggacgcaatcaaggtcgcaatggcaacaaccgcgaccgtaatcgc
ggacgcaatcgtcgtggcgagcgccctgctacgaatgctgcagaaggtggaaacactgag
ggcgcgaataatcgcaacggcaataaccgcaacaacaatcgcaaccaaggtaatcaaaac
ggtccgaagaccgagcacaacgcaaaccgcaataacaatcaagctaatgctgcggcagta
acacccacatcagaggctgtgcctggtagcgaagttgctactggtgctgacggtgaagag
cgtcgtggtcgtggtcgcaatcgtcgtggtcgtggtcgcaatcgcaatgagcgcggtgac
cgtggcgagcgcactgaaaacggtagcgcatcaccagaagcagccactgcatcagccagc
ccgtttagcggacctcccgtaggaatggctggtgcgtctgcaagtatgcctattcaaaat
attgtgagcagctttagcaatgcaaaacctgcaagtcagcgacaagggcggtctgagcgt
tcttcacgtccaccacgtgagcctcgctctgagaaaaacacgtcaacaacagcaaacgca
gctccatcaccagcgcctgtagcgattgttgctgcaagtgcaattgaagtgattgctaag
cctatgccagagcttccaaaagtagctttccaagcacttgaagagactcctttacatagc
gtcgtgcagtctgcgggcatgatttgggttgcaactgatgcgtctaagcacgcagatgtg
caaacacaaattaaagccgagacggtagttcaaaacttaggccgcacaccaaaacccgct
gcaacacttcctgaaggcccaatggtcctagtggaaactggcggtcaagaaaaaactgtt
taa
DBGET
integrated database retrieval system
