Polynucleobacter tropicus: DCO17_02885
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Entry
DCO17_02885 CDS
T08318
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp02020
Two-component system
ptrp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DCO17_02885 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DCO17_02885 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrp03021
]
DCO17_02885 (rpoN)
Transcription machinery [BR:
ptrp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DCO17_02885 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_12
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QKM64269
UniProt:
A0A6M9PUD3
LinkDB
All DBs
Position
complement(541488..542873)
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AA seq
461 aa
AA seq
DB search
MAISLNTRVSQTVSLTPQLQQSIKLLQLSNSELEQELAKAAEENPLLEFEPNPEIESNHS
QSNERVEVAQQSWGGSQISQDDDEDWGERYERVAHKQTLLEYLDEQIHLLNINPEEQSLI
AYMAGCLDDRGYLPEDLKAIHTDIASQLAENTSFKHIEKALAKLQTLDPPGIGARDLAEC
LSLQIDRILENVKVDIAAWELAKEIVTSHLSKVGSKDWQKIKQASGKSEAEVLKAVELIR
TLQHNPGSQFERENDQWILPDVVVKIKQNRWIVESNPNAKPRLTLNNEYARILKENGQKK
IDGALKQKMLEASWLVKNIAQREETIQRVAQAIVERQQQFFSMGAIGMKPLVLREIAEEL
EMHESTISRVTTQKYLACPLGIFEFKYFFSSQVSTEKGGGISSTAIQALIKKIVEEESAK
KPISDTQIAQLLSEQGYIIARRTVAKYRDVLRIPPVHLRKQ
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggccatctcacttaatacccgagtcagccagacggtaagccttaccccgcaattacag
caatctatcaagcttttgcaactctccaactcagagttggagcaagaattagccaaggcg
gctgaagaaaacccgctactagaatttgaacccaaccccgaaattgaatccaaccactct
caatccaatgagcgtgttgaggttgctcaacagtcttggggaggcagtcaaatctcccaa
gatgatgatgaagattggggggagcgctatgagcgtgtcgctcacaagcaaaccctattg
gaatatttggatgaacaaattcatcttctgaatatcaacccagaagagcaatccttaatt
gcctatatggccggatgtctcgatgatcgcggctaccttccagaagaccttaaggccata
cacacagatattgcatcccaactagccgaaaatacttcattcaagcacattgaaaaagcg
ctagctaagttacagacactcgatccacctggaattggcgctcgtgatcttgcagaatgc
ctttcccttcagattgatcgcattctagaaaacgtcaaagttgatattgccgcatgggag
ttagcaaaagaaattgttacatctcatttatcaaaggtgggctctaaggactggcagaaa
attaaacaggctagcggcaaatctgaagcagaagtactcaaagccgtcgaactcattcgg
acattgcaacacaatccaggctctcaatttgagcgcgagaatgatcaatggattttgccg
gatgtcgtcgtcaaaattaaacaaaatcgctggattgtggaatcaaaccccaatgcaaaa
cctcgcctcactttaaacaacgaatacgccaggatcctaaaagaaaatgggcaaaagaaa
attgatggcgccctaaagcaaaaaatgctggaagccagttggctagtaaaaaatattgct
caacgtgaagaaacaattcaaagggtggcacaagcaatagtagagagacagcagcaattt
ttctcgatgggcgcaatcggcatgaaacccttagttcttcgtgaaattgctgaagaattg
gaaatgcatgaatcgactatttcgagagttacaacccaaaaatacctagcatgcccttta
gggatctttgaattcaaatacttttttagcagtcaagtcagcacagaaaaaggcgggggg
atttcgtccaccgcaatacaggcgctaattaaaaaaattgttgaggaagaatctgcgaag
aaacccatttccgatacccagattgcgcaactattaagcgaacaaggttacattatcgcg
cgacgtactgtagcaaaatatcgagacgtccttcgcattccacccgtgcatctgcgcaaa
caatag
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