Polynucleobacter tropicus: DCO17_03625
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Entry
DCO17_03625 CDS
T08318
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCO17_03625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrp03019
]
DCO17_03625
Enzymes [BR:
ptrp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCO17_03625
Messenger RNA biogenesis [BR:
ptrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCO17_03625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKM64407
UniProt:
A0A6M9PZN8
LinkDB
All DBs
Position
681893..683296
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AA seq
467 aa
AA seq
DB search
MTNTATDNNSSTGSGAAPAASPTATITFADFGLDPLIQKAVAEQGYNNPTPIQAQSIPHV
LAGSDLMGAAQTGTGKTAAFVLPIIQKILRHASNSASPARHPIRALVLTPTRELAVQVAD
NAANYSKHTDLRTAVVYGGVDMKEQVQVLRNGVEILIATPGRLLDHIGSKVANLSQVELL
VLDEADRMLDMGFLPDLQRIINLIPAQRQTLLFSATFSPEIKKLAQSYLRSPVTVEVARQ
NAAADTVKQVVHLVNSMDKQRAIVKVLENRTRQGLSRQCIIFTNSRLGCAKLARALERDG
IKAGAIHGDKSQGERTLTLEAFKSGAIEALVATDVAARGLDIPDMPCVINHELPFNAEDF
IHRIGRTGRAGSKGDAIALVDDSEKRLLDDIEKLMKRKLEVAPLPDVKSTPGQITDPFFY
KPYEPGGALKSANADSAQATQLPDVKKAGITPAKPAVGALLGGFKKK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatactgctactgataacaattcatctacagggtctggcgcagctcctgctgcc
agccctacagcaacaattacttttgctgattttggtttagatccgctgattcaaaaagcg
gttgccgaacagggttacaacaacccaacaccgattcaagcgcaatcgattccccatgta
ttagcggggagtgatttgatgggcgcagcgcaaacaggcactggtaagacagcagccttt
gtattgccaattattcaaaagattttgcgtcacgcaagtaatagtgcttcaccagcacgt
cacccaattcgcgcgctagtgttgacgccaacaagagagttggcggtgcaggtggccgat
aacgcggctaattattcaaaacatacggatttacgcactgctgtggtctatggtggtgtt
gatatgaaagagcaggtgcaagtcttacgtaatggcgtagagatcttgattgctacgcca
ggccgattgctagatcacattggttccaaggtggccaacctgtcacaagtagagttactg
gtgctagatgaggcagaccgcatgctcgacatgggcttcttgcctgacttgcagcgcatc
atcaatttgattccggcgcaacgccaaaccttattattttctgcgaccttctcgccagag
attaagaaattagcgcaaagctatttgcgctctccggtaacggtagaagtggcacgacaa
aatgccgcggctgatacagtgaagcaggtagtacatttggtaaattcaatggataagcaa
cgtgcgattgtgaaggtcttggagaatcgtactcgtcaaggcttgtcacgtcagtgcatc
atctttaccaatagccgtcttggttgcgcaaaattagcacgcgccctagagcgtgatggc
atcaaggctggcgcgattcatggtgacaagagtcagggtgaacgcaccttaactctagaa
gcgtttaagtcaggtgcaattgaagctttagtagcaactgacgttgcagcgcgtggcttg
gatattcccgatatgccatgcgtgattaatcatgagttgccatttaatgctgaagacttt
attcatcgcattggtcgtacgggtcgcgcaggtagtaaaggcgatgcgattgccctagtt
gacgacagtgaaaagcgtttgctcgatgatattgagaaattaatgaagcgcaaactagaa
gtggctccattgcctgatgtgaaatccaccccagggcaaatcacagacccgttcttctac
aaaccttatgaaccaggcggtgcactaaaatccgcaaatgcagattcggcacaagcaact
cagttgccggacgtaaaaaaggcaggcatcactcctgctaagcctgctgtgggtgcattg
ctaggtggctttaagaaaaaatag
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