Polynucleobacter tropicus: DCO17_04740
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Entry
DCO17_04740 CDS
T08318
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCO17_04740 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrp03019
]
DCO17_04740 (pnp)
03016 Transfer RNA biogenesis [BR:
ptrp03016
]
DCO17_04740 (pnp)
Enzymes [BR:
ptrp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DCO17_04740 (pnp)
Messenger RNA biogenesis [BR:
ptrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DCO17_04740 (pnp)
Transfer RNA biogenesis [BR:
ptrp03016
]
Prokaryotic type
tRNA degradation factors
DCO17_04740 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QKM64601
UniProt:
A0A6M9PWF1
LinkDB
All DBs
Position
915194..917353
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AA seq
719 aa
AA seq
DB search
MSMFKKAVKSFQWGNHQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKTAKPGQDFFP
LTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFYNEVQVVVHVL
SINPDVPSDIPALIAASAALAVSGIPFSGPVGAARVGYANGQYLLNPTRSEQATSELDLI
VAGTQAAVLMVESEANQLSEEIMLGAVVYGHEQMQTAINAINDLVREAGKPEWDWQAAPK
DEPLIAKVSALAEGPLREAYQIRQKGARSDKLKAITKEVLAKLAEEGEVDDVAVGNILFE
IEAKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA
RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSPE
DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFAVLT
DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE
AMGSVRTELSAHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIQDDGTVTIAS
TNADGLAEAKSRIEGITAEAEVGKIYEGPVVKLLEFGALVNILPGKDGLLHISEISNERV
KEVKDYLQEGQIVRVKLLAADERGRLRLSLKAAMADEGGTITPLAGAADAAPAPSGETA
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgtttaaaaaagcagtgaagagttttcagtggggcaaccatcaagtaaccatg
gaaacaggcgagatcgctcgtcaagctggtggtgctgtaatcgttaacgtagatgacacc
gtagtaatgggtacagtagttgcctctaagactgctaagccaggccaagactttttccca
ttgacagtagattatcttgagaagacctatgctgcaggtaagattcctggcggcttcttc
cgtcgtgaaggtcgtccatctgaaggtgaaacattaatctctcgtctgattgaccgtcct
attcgtccattattcccagaaggcttctacaacgaagtacaggttgtagtgcacgtgttg
tcgatcaatccagacgttccatctgacatccctgcattgatcgcagcttctgcagcattg
gcggtttctggtatcccatttagcggtccagttggcgcagctcgtgtgggttatgcaaat
ggccagtatctattgaacccaactcgttcagagcaagctactagcgagctcgatttaatc
gttgctggtacacaagctgctgtattgatggttgaatctgaagcaaaccaactttctgaa
gaaattatgttgggcgcagtcgtatatggtcacgagcaaatgcaaaccgcgatcaatgcg
attaacgatttggttcgtgaagcaggtaagccagagtgggattggcaagcagcccctaaa
gatgagccattgattgctaaagtaagcgcattggctgaaggcccattgcgtgaggcatat
caaattcgtcaaaagggcgcacgctctgacaagcttaaggcaatcactaaagaggtattg
gcgaaattagctgaagaaggtgaagtggatgatgttgctgttggcaatatcttgtttgaa
atcgaggcaaagattgttcgtagtcagattttgaatggcgagccacgtattgatggtcgc
gatacacgcaccgttcgtccaatcgagattcgtaatggcgtattaccacgcactcacggt
tcagcattgtttactcgcggtgaaacacaggctctcgttgttgctactttgggtacagcg
cgtgacgaacaaattattgatgcgctcgaaggtgaataccgcgatcgtttcatgttccac
tacaacatgcctccatttgctactggcgaaactggtcgcgtaggtagccctaagcgtcgt
gaaatcggccacggtcgtttggcaaagcgcgcattgattcccgtgttgccaagcccagag
gactttgcatacagcattcgtgtagtttctgagatcaccgaatctaatggctcttcatcc
atggcttctgtttgcggcggctgcttagcaatgatggatgctggtgttccagttaaggct
cacgttgctggcgttgcaatgggcttgattttggatggcaatcgttttgctgttctaact
gacatcttgggtgacgaagatcacttgggcgatatggacttcaaagtagctggtacagct
aacggtattactgcattgcagatggatatcaaagtccaaggtattactaaagagatcatg
caggttgcattagcccaggctaaagaaggtcgcttacatatcttgagcaagatgcaagaa
gcaatgggttctgtacgtacagaattgtcagcacatgctccacgcatggtgtcatttaag
attcatccagacaagattcgcgaagtgattggtaagggtggtgcaaccatccaggctttg
accaaagaaactggttgcagcatcgacattcaggatgatggcactgtaacgattgcctct
accaatgctgatggtttggctgaagctaaatcccgcatcgaaggtattactgcagaagct
gaagtaggcaagatctatgaaggcccagtagtgaagctcctcgagtttggcgcattagtc
aatattcttcctggtaaagatggcctcttgcacatctctgagatttcaaatgagcgtgta
aaggaagttaaggactatttgcaagaaggtcagattgttcgcgtgaagttgttagctgct
gatgagcgtggtcgtttgcgtttatctcttaaggctgcaatggcagatgagggtggcacg
attactcctttagcaggcgcggctgatgccgctcctgctccatctggcgagactgcttaa
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