Polynucleobacter tropicus: DCO17_06395
Help
Entry
DCO17_06395 CDS
T08318
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptrp
Polynucleobacter tropicus
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrp03019
]
DCO17_06395 (hrpA)
Enzymes [BR:
ptrp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DCO17_06395 (hrpA)
Messenger RNA biogenesis [BR:
ptrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DCO17_06395 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_19
AAA_30
AAA_22
NACHT
HA2_N
nSTAND3
T2SSE
AAA_25
zf-U1
AAA_11
PhoH
ResIII
GP17
SLFN-g3_helicase
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QKM65709
UniProt:
A0A6M9PY77
LinkDB
All DBs
Position
complement(1240785..1244810)
Genome browser
AA seq
1341 aa
AA seq
DB search
MPASNTGRRLEIRFPEELPVSGQRQLIKDALQSHQVVIVCGETGSGKTTQLPKICLDLGR
GTINGGKLIGHTQPRRIAATATAKRIAQELGSPIGQDVGYQVRFADKTSHTASIKLMTDG
ILLAETQRDPQLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPKRPDLKLIITSATIDAQR
FAEHFAINGKVAPVIEVSGRLYPVEQRYSPLEPDAKSDAKPDNKKESKTAKEIPEAVAEE
IAKLWREGAAGAGDVLVFLPGEREIRDCAEALRKDHVLQQRFHPEVLTLFARQSVAEQER
VFSPGNGRRIILTTNVAETSLTVPNIRYVIDSGLARVKRYSYRNKVEQLQIESISQAAAN
QRAGRCGRVSDGICVRLYSEQDFLNRSKFTDPEILRSSLAAVLLRMSALRLPKITHFPFI
DKPLGRAIADGVQLLDELGAIQFDEAQASDSKDGKELQNNFKLTQIGKQLADLPLDPRIG
RMLLAAKEQNALKEVTIIASALATQDPRERPMDQAGAADQAHLQFADERSEFLSFVKLWN
WYQDALQHKHSNRQLENLCRSKFLSPRRMREWRDVHGQLRTMLGEKGWKENGLAATYEQV
HLSLLTGLLGFVAKKEEDEKSQDRSSKTGGYVGARGIRPFIWPGSTIGKKAGAWILAGEL
QETSRMYARTIAKIEPQWVEKVAGHRLIKALSDPFWDNRQGEVLAFERGTLYGLPIYHGR
RVRYEPHDAQEARELFIRHALVEEELFGRMDTPSLQRETEADAKRKYSNAFGFFWHNHRL
VKEIEALEHRSRRPDVLVDDDLLFAFYDSRIPKDICNREGLKGYLNKHPDLDGQLRLEKA
DLMRHEAAGITVDRYPKTMKVGGAQLSLTYHFEPGSPKDGVTLVVPLAQLNQIDGRRCDW
LVPGMCEEKILLLLKTLPQKLRRHCVPLPDYAKSYLERKLDSNQFGVGDFLDSLIDDIRQ
ERGLEIKRTDFRPEALPLHCSMNYRLIDEHGRQLELERNLARLRSEYGQTAREAFQAVTQ
EAVHAELGIDLTKDQAKPVSPNGKTQEQVRKIEQDGYRSWDFGELPETLEIAKANKTLFG
YPALIDRGDYCDLEVFDDLLEARKQHTQGLRRLFALNNKDTLKALQKQLPGIREIGLLFI
NVGSVESLLEQILNLSIERAFMAEPLPNTAELFAQRLQEGKPRLALIAQEIARHALAALQ
AHADLLKKMAQAKAASPTAYADIQAQVQGLIFAKFVVDIPYAQLVHLPRYLKAIGLRIDK
MRSNPARDAQCQKDWESVARPWQKLIQGSRGSASYAMEGDQALMDFRWQLEELRVALYAQ
ELKTPTPMSLKRLEKVLASLR
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgcttccaacactggacgaaggctcgagatccgctttccagaagaattgccagtc
tctggtcagcgccagctgatcaaagatgccttgcagagccatcaggtggttattgtttgt
ggcgaaacgggctcaggtaagacgacacagttgcccaagatctgtttagatcttggccga
ggcacaatcaatggtggcaaattgattggccatacccagccccgcagaatcgctgcgact
gctacggccaaacgtattgcccaagagcttggatcgcctattggacaagatgtcggctat
caagtgcgctttgcggataagactagccataccgcctctatcaagttgatgacagacggt
atcttattggcggagactcagcgtgatccccaattacgggcttatgacaccctcatcatt
gacgaggcgcatgaacgcagtctgaatattgatttcttattgggctatctcaggcagcta
ctgcctaaaagaccagaccttaagctcatcatcacctctgccacgattgatgcacagcgt
tttgctgagcactttgcaatcaacggcaaggttgctcctgtaattgaggtgagtggcagg
ttatatccggtggagcagcgctattcaccgttagagcccgatgctaagtcggacgccaaa
ccagataacaaaaaagaatcaaagacggccaaggaaatcccagaggcggtagcggaagag
attgccaagttatggcgagagggtgcagcgggagcgggtgatgttctagtctttctgcca
ggcgagcgtgagattcgagattgcgctgaagctcttcgcaaagaccacgtcttgcagcaa
cgttttcatcctgaggtattaaccttatttgcgcgtcaatcggttgcggaacaagagaga
gtgttttctcctggcaatggtcgtcgaatcattttgacaactaacgttgccgaaacttcc
ttaacagttcccaatattcgctatgtgattgatagtggcttggctagggtcaagcgttat
tcctatcgcaacaaagtagagcaattgcaaatcgagtccatctcgcaggctgcggctaat
caacgcgcaggtcgttgcggacgtgtgtcggatggcatttgtgttcgtctctacagtgaa
caagactttttaaatcgatcaaaatttaccgatcctgaaattcttcgtagctctttggct
gccgtcttattgcgcatgagcgctttgcgcttaccgaagattacgcatttcccattcatt
gataaacccttgggaagagcgattgcagatggtgtacaacttttggatgaactgggcgct
attcaatttgatgaggcgcaggctagtgatagtaaggacggtaaagagctacaaaataac
ttcaagctaacgcagattggcaagcagttagcagacttgccgctggatccgcgtattggt
cgcatgttactagctgccaaagagcagaatgcattaaaggaagtgacgatcattgcttcg
gctttggcaacgcaggatccgcgtgagcgccctatggatcaagcaggggccgcagaccag
gcgcatttgcagtttgccgatgagcgctctgagtttttgagttttgtgaagctatggaat
tggtatcaagatgccttacaacacaaacatagtaatcgtcagctcgagaacctatgccgc
agtaaatttttatctccacgtcgcatgcgtgaatggcgcgatgtgcatgggcaattgcgc
accatgctaggtgagaagggctggaaagaaaatggccttgctgccacttatgaacaagtt
catttatcactattaactggcttacttggctttgttgctaaaaaagaagaggatgagaag
tctcaagatcgcagtagcaaaacgggtggttatgtaggtgctcgcggtatacgcccattt
atttggcctggctccactattggtaaaaaagcgggcgcatggattctggcgggtgagttg
caagaaaccagccgcatgtatgcgcgcaccattgccaaaatagagccgcaatgggttgag
aaggttgccggccatcgattaattaaggccttaagtgatccattttgggataaccgccaa
ggtgaggtattggcatttgagcgcggcactttgtatggattgccgatttatcatgggcgc
cgtgtgcggtatgagccgcatgatgcgcaagaagcgcgtgaattatttattcgccatgct
ttggtcgaagaagagttatttggacgtatggatacaccttcgcttcaacgtgaaactgaa
gcagatgccaagcgtaagtattcgaatgcatttggattcttctggcataaccatcgacta
gttaaagagatcgaggctttagagcatcgctcacgtcgccccgatgtcttagtagatgat
gatctgctatttgctttctatgactctcgtattccgaaagacatatgcaatcgtgagggc
ctcaaaggatatttaaataaacaccccgatctagatggacagctgcgcctagaaaaagct
gacctgatgcgccatgaagcagcaggtattaccgttgatcgctaccctaagaccatgaaa
gtagggggcgcacaactcagcttaacttatcactttgagccaggcagccccaaagacgga
gtgacgttagtagtgcctttggcccagctcaatcaaattgacgggcgtcgttgtgattgg
ttagtcccagggatgtgtgaagagaagattctgttgttgctaaagactctgcctcaaaaa
ttacgacgccattgtgttcctttgcctgattacgccaagtcatatcttgagcgcaagctt
gatagcaatcaatttggagtgggtgattttctagatagcttgattgatgacattcgccaa
gagcgtggtctagaaattaaaagaacagatttccgaccagaagcattgccattgcattgc
tctatgaactaccgcttgattgacgagcatgggcgccaattagagcttgaacgaaatctg
gctcgtttgcgttcggagtatggacaaacagcgcgcgaggcttttcaagcggtaacgcaa
gaggcagtgcatgcggagctaggtattgatttaactaaggatcaagctaagcccgttagc
cccaatggcaagactcaagaacaagttcgcaagatagagcaggacggttaccgaagttgg
gattttggcgagctaccagaaaccctagagatcgctaaagctaacaagaccttatttggt
tatcctgcactcattgatcgtggtgattattgtgatctagaagtatttgatgatttgctg
gaagcgcgcaagcagcatacccaaggcttgcgacgcctcttcgccttaaacaataaagac
acgctaaaagcgttacaaaaacaattgcctggcattagagaaattggtttgctatttatt
aatgttgggtcagtagagagtttgcttgagcagattctgaatctctccatagagagggct
ttcatggcagagccactgcctaataccgcagagctatttgcacaacgtctgcaagaaggc
aagccaagattggctttaattgcgcaagaaatcgcgcgtcatgctttagctgctttgcaa
gcccacgcagacctgctgaaaaagatggctcaagcaaaagcggcatctccaactgcatac
gcagatattcaggcgcaggtgcaaggtttaatctttgctaaatttgttgttgatattcct
tatgcgcagttagtgcatttgccgcgatacctaaaggcgatcggcttgcgaatcgacaag
atgcggtctaacccagctcgagatgcgcagtgtcaaaaagattgggagtcggtagcaaga
ccatggcaaaagctgatacaaggcagcagggggtccgcttcctatgcaatggagggtgac
caagccctgatggattttcgttggcaattagaggagttaagggtggctttatatgcccaa
gaacttaaaacgccaacgccgatgtccctaaagcgcttagaaaaagttttagccagcttg
cgttag
DBGET
integrated database retrieval system
