Polynucleobacter tropicus: DCO17_06430
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Entry
DCO17_06430 CDS
T08318
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCO17_06430 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrp03019
]
DCO17_06430 (rnr)
03016 Transfer RNA biogenesis [BR:
ptrp03016
]
DCO17_06430 (rnr)
Enzymes [BR:
ptrp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DCO17_06430 (rnr)
Messenger RNA biogenesis [BR:
ptrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DCO17_06430 (rnr)
Transfer RNA biogenesis [BR:
ptrp03016
]
Prokaryotic type
tRNA degradation factors
DCO17_06430 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
QKM64896
UniProt:
A0A6M9Q3X2
LinkDB
All DBs
Position
complement(1249642..1252026)
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AA seq
794 aa
AA seq
DB search
MRKAKDLMPRQADRLGTIQGHRDGFGFVIPDDGGEDIFLSEREMSRVMHGDRVNVRVIGT
DRRGRPEGQIVEVIQHVNKVVIGRLLNENGVLIVAPEDKRIGHDILIPPKGQGQAKLGQV
VSVEIIDYPDSYRQAVGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFSAAAMKEAAALPDS
VRQEDLEGRVDLRDVPLVTIDGADARDFDDAVYCEPVMYGKTKAWRLIVAIADVSHYVKP
GQPLDDEGLLRATSVYFPRRVIPMLPEKISNGLCSLNPGVDRLCMVCDSVVDNNGVVLAY
QFYPAVMHSEQRFTYDTVWEILSNSKGPEAARFAQFRPLLTNLYSLFKILLAAREKRGAI
EFETTETQIISNELGKILRIEPRIRNDAHRLIEECMLTANVCAADFIEKNKHLSLYRVHG
EPSEEKLVTLRQVLRTSGLSLGGGEKPKPKDFAKLMREIQDRPDANMLQSVVLRSMQQAM
YQPDNEGHFGLAYPAYSHFTSPIRRYPDLLTHRVIKSILQKKPYVPVLPPKVPLNLTLPR
KGKGRENAVNAKKSQSDAKAGPEKGAKVPKGANAALPIWGQLGVHCSSNERRADEASRDV
EAWLKCYYMRDHLGQEYAGTVTSVANFGLFVQLENLFVEGMVHVTELGGDYFQYDEARQE
LRGERTGIRYRLGDRVHVLVSRVDLDARKIEFSLVKASGADSGGASGRRQMMLATDTGRP
SKKAASTKSRPSHKTPQKSGGVNVNAAKSAGTLSATQSKSKASRKNAKGGKPGRSAGKAA
GSKPSVRNTRARRK
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaagcaaaagacttgatgcctcgacaggcggatcgtttaggaacgattcagggg
caccgagatgggtttggatttgtaatccccgatgatggtggtgaagatatttttctctct
gagagagaaatgtctcgcgtcatgcatggggatagagtcaatgtcagagtcataggaacg
gatcgacgtggtcgcccagaagggcagatcgttgaggtgattcaacacgtcaacaaagtc
gtcattggccgtctcttaaatgaaaacggcgtactgattgttgcgccagaagataaacgt
attggtcacgatatcttgattccgcctaagggtcagggtcaagctaagttaggtcaggtt
gttagcgttgagattattgattatccagatagttatcgccaagcagtagggcgtgttgta
gaagtcttaggtgagatcgatgatcccggcatggagattgagattgcggtacgtaagtac
ggcgttccccatgagttctctgcagcagccatgaaagaagctgcagccctaccagatagt
gttcgccaagaggatcttgagggtcgtgttgacttgcgtgatgttccattggtcacgatt
gatggagctgatgcaagagactttgatgatgcagtctattgcgagccagtgatgtacggc
aaaactaaggcttggcgccttattgttgcgattgctgatgtgtctcattacgttaaacct
ggccaacctttagatgatgagggcttgttacgcgctacctcagtatattttccaaggcgc
gttattccgatgttgcccgagaagatctccaatggcttgtgctcgctaaacccaggtgta
gatcgcctatgcatggtgtgtgactctgtagtcgataacaatggcgtcgtcttggcctac
cagttctatccagcagtgatgcattcggaacaacgtttcacctatgacaccgtctgggaa
attctatctaatagcaaaggtcctgaggcggctcggtttgcgcaattccgtccgctacta
acgaacctgtattcattatttaagattctattggctgcccgtgagaagcggggtgcaatc
gagtttgaaacaaccgaaacccaaatcattagtaatgaacttgggaagattttgcggatc
gagccacgtattcggaatgatgctcaccgcttaattgaagaatgtatgttgacagcgaac
gtctgtgctgcggatttcattgagaagaataagcatttaagtctgtaccgtgttcatggt
gagccttctgaagagaaattggtgacattgcgccaagttcttagaacctcgggattatcg
ttgggtggcggtgaaaaacccaagccaaaagatttcgcaaagttaatgcgggagattcag
gatcgtcctgacgccaatatgttgcaatctgttgtgttgagatctatgcagcaggcaatg
tatcagccagacaacgagggacactttggattggcatatccagcgtactctcatttcaca
agcccaattcgccgttatcctgatttactgacccatcgtgtcattaagtccattttgcag
aagaagccatatgtcccggtcttgccgccgaaagtgccgctgaatttaactcttcctcgc
aaaggtaagggcagggaaaacgcagtaaatgctaaaaaatcccaaagcgatgccaaagct
ggtccggaaaaaggcgcaaaagttccaaagggtgcaaatgccgctctaccaatttggggt
caactcggtgttcattgctcatccaatgagcgccgcgctgatgaggcatctcgagatgtc
gaagcatggctcaagtgttactacatgcgcgatcatttaggtcaagaatatgctggcact
gttaccagtgttgctaactttggcttatttgttcagttagagaatctctttgtcgaaggc
atggtgcatgtaactgaattgggcggggattatttccaatacgatgaagcacgccaagaa
ctacgtggtgaacgcaccggcattcgttatcgcttaggcgatcgagtgcatgtattggta
agcagggtagatttagatgcacgtaagattgaatttagcttggtaaaggcatctggcgct
gactcgggtggtgcatcgggtcgtcgccaaatgatgctggctaccgatacgggtaggcca
agcaagaaggctgcctctactaagagcagaccatctcataaaacgccgcaaaagtcgggt
ggcgtcaatgtaaacgcggctaaatctgcgggtacactgagtgcaacacaatcgaaaagt
aaggccagccgcaagaatgctaagggcggtaagcccggcaggtctgcaggtaaagctgct
ggctcaaagccatcagtgcgcaatactagagctagacgtaaataa
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