Polynucleobacter tropicus: DCO17_06915
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Entry
DCO17_06915 CDS
T08318
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCO17_06915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrp03021
]
DCO17_06915
03019 Messenger RNA biogenesis [BR:
ptrp03019
]
DCO17_06915
Transcription machinery [BR:
ptrp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DCO17_06915
Messenger RNA biogenesis [BR:
ptrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DCO17_06915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_25
AAA_5
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QKM64984
UniProt:
A0A6M9PRF0
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All DBs
Position
1354471..1355733
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AA seq
420 aa
AA seq
DB search
MQLTELKGLHVSALLEMAAGLEIENTQRMRKQELMFAILKKRAKAGETVYGDGTLEVLPD
GFGFLRSPEASYMASPDDIYISPAQIRRFNLHTGDSVEGEVRTPKDGERYFALVKVDKIN
GLAPEALKNRIMFENLTPLHPNRIIGLERDIKAEENLTGRIIDMISPIGYGQRGLIVASP
KSGKTVMMQHIAHAISANNPDAILIVLLVDERPEEVTEMQRSVRGEVVASTFDEPAVRHV
QVAEMVIEKAKRLVEMGKDVIILLDSITRLARAYNTVVPSSGKVLSGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDLIYEEFKGTGNMEVHLERRLAERRVYPSINL
NKSGTRREELLVKPENLQKIWVLRKLLADMDDIEAMNFIVDKLKSTKNNGEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaactgaactcaaaggcctccacgtatccgctttgcttgaaatggctgctgga
ttggaaattgaaaacacgcaacggatgcgcaaacaagaattgatgtttgcaattctgaag
aaacgcgctaaagctggtgaaactgtttacggtgatggcaccttagaagtcttgccagat
ggctttggcttcttgcgttctccagaagcctcatacatggcttctcctgatgatatttat
atttctcctgcgcagattcgccgctttaacttacacactggtgatagcgttgaaggcgaa
gtgagaacaccaaaagacggcgagcgttactttgcattggtaaaagtcgacaagatcaac
ggtttggctcctgaagccctaaagaaccgaatcatgttcgaaaacttaacgccactacac
cctaaccgcattattggtttagagcgtgatatcaaggctgaagagaatctcactggccgc
atcatcgatatgatttctccaatcggctacggtcaacgtggcttgattgttgcttcacct
aaatccggtaagactgtgatgatgcagcacattgcgcatgcaatttctgcgaacaatcct
gatgcgattttgatcgtattgttggttgatgagcgtcctgaagaagttaccgagatgcaa
cgctccgttcgcggtgaagtggttgcctctacctttgatgagcctgctgtacgtcacgtt
caagttgccgagatggtgattgaaaaagccaaacgtttagtggagatgggtaaagatgtg
atcatcttgctggactcgattactcgtcttgcacgcgcatacaacaccgttgttccttcc
tctggaaaagtattatctggtggtgtggatgcaaatgcattgcaacgtccaaaacgtttc
tttggtgcagcacgtaatattgaagaaggtggctctttaaccatcatcgcaactgccttg
attgaaactggtagccgtatggatgacctcatttatgaagagttcaagggcaccggcaat
atggaagttcaccttgagcgtcgcctggctgagcgtcgcgtctacccatctattaacctc
aataagtctggtacccgccgtgaggaattactggttaaaccagaaaatctccagaagatc
tgggtattgcgcaaattgctggctgatatggatgacatcgaggcaatgaactttattgtt
gataagctcaaatccactaaaaacaatggtgaattcttcgacctgatgcgtcgcgggggc
taa
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