Polynucleobacter tropicus: DCO17_08505
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Entry
DCO17_08505 CDS
T08318
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DCO17_08505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptrp03021
]
DCO17_08505
Transcription machinery [BR:
ptrp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DCO17_08505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
SPO22
GAD
Motif
Other DBs
NCBI-ProteinID:
QKM65743
UniProt:
A0A6M9Q7W4
LinkDB
All DBs
Position
complement(1662360..1664828)
Genome browser
AA seq
822 aa
AA seq
DB search
MKAKAPAKPVAKAKAPAKPVTKPAPKSKVLAKAPAKPASKAKAAVKAKTPAKPAPKAKVP
AKAATKAATKAPAKPAPKSKVVAKAPAKPAPKAKAPVKAPAKVEKSVKAVKGAKAEAKVD
PAKKGKAAVKVEDAKELKGKKAKAVEAEVVAPQEEKKRGRKAKEVAADGAEPVLTDRQKA
RERKAKEKALLKEFAAQQLGTEEQQELRRARLKTLIKMGMSKGYLTHGEMNDVMSDELSD
ADALETLISLLNDIGITVYEQAPDAETLILSDATAAAASEEEAEEEAEAALSTVDSEFGR
TTDPVRMYMREMGTVDLLTREGEIVIAKKIEAGLKDMVMALSACPVTIAEILSNVDKIAA
GELEIDQFVDGLVDPNAEDIKLGPDEPEVDADGEEGDEDGEDEGGGGGGAATANAKQLEE
LKQISLEKFAIVRTQAEKMRRAFDKDGYNCPAYVKAQEAIRAELLGFRLTAKSVEKLCDT
MRAQVDQVWKLERGIVSLLVDKVGVNRGDVLKDFPKMSMNLGWTDKLLKEGKPYSALLQR
NVPAIQELQQKLIDIQKNVVIPLPELKEVNKQMIAGEKRAREAKREMTVANLRLVISIAK
KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI
PVHMIETINKMNRISRQILQETGHEPDAATLALKMEIPEDKIRKIMKIAKEPISMETPIG
DDEDSHLGDFIEDGNTLAPSEAALHDSMRDVVKDVLDSLTPREAKVLRMRFGVEMSTDHT
LEEVGKQFDVTRERIRQIEAKALRKMRHPSRSDKLKTFLEED
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagctaaggcacctgctaagccagttgccaaggcaaaagcacccgctaaaccagta
actaagccagcgccgaaatctaaggttttggcaaaggcgccagctaagccagcgtctaag
gcaaaagctgcggtaaaagccaagactcctgccaagccagcaccaaaagctaaagttccg
gctaaggcagcaactaaggcagcaactaaggcaccagctaagccagcaccaaaatcgaag
gttgttgcaaaagctcctgcaaagccagcgccaaaagcgaaagctccggtcaaggcgcct
gcaaaagttgaaaagtcagtgaaggccgtaaagggcgctaaggctgaggcaaaagtagac
ccagcaaaaaaaggcaaagcggctgtaaaagttgaagatgcaaaagaattaaaaggcaaa
aaagcgaaagcggttgaagcggaagttgttgcacctcaagaagagaagaaacgtggacgt
aaagctaaagaagtagctgcggatggagcagagccagtattgaccgaccgccaaaaagcg
cgtgagcgtaaggcaaaagaaaaagctctcctaaaagagtttgctgcgcaacagttaggc
actgaagagcagcaagagttacgtcgtgctcgcttgaagacgttgatcaagatgggtatg
tccaagggctacttgacccatggcgagatgaatgacgtgatgtctgatgagttgtctgat
gcagatgcattagaaactttgatcagcttgttaaatgacattggtattactgtttacgaa
caagcgccagatgcagaaacattaattctgtctgacgccacagcagccgccgcttctgaa
gaagaggctgaagaagaggctgaagcagcgctctcaactgtggattcagagtttggacgc
acaactgatccagtacgtatgtatatgcgtgaaatgggtacggtagatttattgactcgc
gaaggcgagatcgttattgcgaaaaagattgaagctggtctcaaagacatggttatggct
ttgtccgcatgtcctgtaacgattgctgagattctgagtaacgttgacaaaattgctgct
ggcgaattggagattgatcaatttgttgatggcttggtagatccaaatgcggaagacatc
aagcttggccctgatgagcctgaggttgatgccgatggcgaagagggtgatgaagatggc
gaagacgaaggcggcggtggcggcggtgctgcaactgcaaatgccaagcagctcgaagaa
ttaaagcaaatctctttagagaagtttgcaattgttcgtacgcaagcagaaaaaatgcgt
cgtgcttttgataaagatggttacaactgtcctgcatacgtaaaggcgcaagaagcgatt
cgtgctgagttgctcggcttccgtttaactgccaagagtgttgagaagttatgtgacacc
atgcgtgcccaggttgaccaagtttggaaacttgagcgaggcatcgttagcctcttggtt
gataaagttggcgtgaatcgtggcgatgttctgaaagacttcccaaagatgtcgatgaac
ttaggttggacagacaagttgctcaaagaaggcaagccatacagcgctctcttgcaacgt
aacgttccagctattcaagaattgcaacagaagttgatcgacattcagaagaatgtagtg
attccattgcctgaattgaaagaagtaaacaagcaaatgatcgctggcgagaagcgtgcc
cgcgaagcgaagcgtgagatgacggtagctaacttacgtttggtaatctcaatcgctaag
aaatacaccaaccgtggtttgcaattcttggacttgattcaggaaggcaatattggtttg
atgaaggcagtagataagttcgaataccgtcgtggttataagttctctacttatgcaact
tggtggattcgtcaggcaattactcgttcgattgctgaccaagcgcgtacgatccgtatc
cctgttcacatgattgagaccatcaacaagatgaaccgtattagtcgtcagattttgcaa
gaaactggtcatgagccagatgcggcaactctagcgctgaagatggagattccagaggac
aagattcgtaagatcatgaagattgctaaagagccaatctctatggaaacaccaattggt
gacgacgaagattctcatttgggcgatttcattgaagatggtaataccttggccccatcc
gaagcagcattgcatgactctatgcgcgatgttgtgaaagatgtcctggattcattgaca
ccacgtgaagcaaaagtattgcgtatgcgctttggtgttgagatgagcactgaccatact
ctcgaagaagtgggcaaacagtttgatgtgactcgtgagcgtattcgtcagatcgaggcg
aaggcattgcgcaagatgcgtcatccaagccgtagcgacaaactcaagactttcctcgag
gaagattga
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