Polynucleobacter tropicus: DCO17_09480
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Entry
DCO17_09480 CDS
T08318
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCO17_09480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptrp03400
]
DCO17_09480
DNA repair and recombination proteins [BR:
ptrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DCO17_09480
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DCO17_09480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_23
AAA_22
DnaJ_CXXCXGXG
BCA_ABC_TP_C
AAA_21
AAA_25
nSTAND3
Viral_helicase1
APS_kinase
cobW
Pept_S41_N_bact
Motif
Other DBs
NCBI-ProteinID:
QKM65449
UniProt:
A0A6M9PXH7
LinkDB
All DBs
Position
1871488..1874388
Genome browser
AA seq
966 aa
AA seq
DB search
MNNEIKIRGARTHNLKNINLDIPREKLVVLTGLSGSGKSSLAFDTLYAEGQRRYVESLSA
YARQFLQLMEKPDVDTIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPH
CPEHDLPLEAQSVSQMVDTVLAMPEDTKLMILAPVVSERKGEFVDFFQDLQAQGFVRFRV
RSGGGTANAAKAEIFEVDQLPALKKNDKHSIEVVVDRIKVRPDIQQRLAESFETALRLAD
GKAMIVDMDTGKEMIFSSKFACPVCSYSLQELEPRLFSFNNPMGACPSCDGLGHQSFFDP
KRIVAHPDLSLASGAIKGWDRRNQFYFKLLQTLAKHGGFDVEKPFESLSKKQQDLILLGS
GDVTIPFEYINERGKNTIREHAFEGIVANFERRYRETDSVTVREELARYQNIQTCPECSG
SRLRKEARFVRVGEKKQSRAIYEISALPLKDAKEYFETLELKGAKKEIADKIVKEISARL
RFLNDVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL
IGTLKHLRDLGNSVLVVEHDEDMIRASDWVIDIGPGAGVHGGEIVAQGTPAEVEADIKSL
TGAYLAGRESIEVPEKRIPVNDRFLEIIGARGNNLQSVHAKIPVGLLTCVTGVSGSGKST
LINDTLHHAVAQHLYGSSAEPAAHDAIKGLEHFDKVISVDQSPIGRTPRSNPATYTGLFT
PIRELFAGVPAARERGYEAGRFSFNVKGGRCDACEGDGVLKVEMHFLPDVYVPCDVCHGK
RYNRETLDIRYKGKNIHEVLSMTIEQAHEFFEAVPVVKRKLKTLLDVGLGYVQLGQSATT
LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIQLLLTVIQTLKKQGNTIVIIE
HNLDVIKTADWIIDLGPKGGAGGGQIIATGTPEEVAKNDVSFTGHYLAPLLTRKMSTSAG
AAKKKK
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgaaatcaagatccgcggtgcccgcacccacaacctcaaaaatatcaatctg
gacattcctagagagaaactggtcgtcttaactggcctatccggctcagggaaaagttca
cttgcttttgacacgctctatgcagagggtcaacgacgttatgtagagtcattatccgcc
tatgcccgtcaatttttgcagttaatggaaaaacccgacgtagatacgatcgagggttta
tctccagcaatctcaatcgagcaaaaggcgaccagccacaatccgcgctctaccgttggc
accgtaacagaaattcatgattacctgcgtctcttatttgctcgcgcaggaacaccacat
tgcccagaacacgatcttccgctggaagcgcaaagcgtttctcaaatggtagatacggta
ttagcaatgccagaagataccaagctcatgattcttgctcccgtggtcagcgagcgtaaa
ggtgagtttgttgattttttccaagatctccaagcgcaaggctttgtgcgctttcgtgtg
cgctctggtggaggcaccgccaatgccgctaaagcagaaatctttgaagtagatcaatta
ccagcactaaagaaaaacgacaaacactctattgaagttgtagtagatcgaattaaagtt
cgacctgacattcaacaacgccttgctgaatcgtttgagactgccctgcgcttagctgat
ggcaaagcaatgattgttgatatggataccggcaaagagatgattttctcgagcaaattt
gcctgtccagtttgctcatattctttgcaagagctagagccacgtcttttttctttcaac
aatccgatgggcgcctgcccctcatgcgacggacttggacatcaatctttctttgatcca
aaacgtatcgttgcgcaccctgatttatcactagcttctggcgctattaaaggctgggat
cgacgcaatcagttttatttcaagctactacaaacgctcgccaagcatggtggcttcgac
gttgaaaagccttttgaatctctttccaagaaacagcaagatctgatcttattgggctct
ggcgatgtcaccataccgtttgagtacatcaatgagcgcggaaaaaatactattcgtgag
cacgcatttgaaggcattgttgctaactttgaacgtcgctatcgcgaaacagattctgtc
actgtgcgcgaagagcttgctcgttatcagaacattcaaacctgtcctgaatgtagcggc
agtcgcctgcgtaaagaagcacgctttgttcgggtgggcgagaaaaaacaatcgcgcgct
atttatgaaatcagcgcactcccactaaaggatgcgaaagaatatttcgagactcttgag
cttaagggtgctaaaaaagaaattgccgacaagattgttaaagaaatcagtgctcgtcta
cgcttcttaaacgatgttggccttgactatctctcacttgaacgcagcgcagacacgctc
tcaggtggcgaggcacaacgtattcgccttgcaagccagattggttctggattaacaggt
gtgatgtatgtattagacgagccatcaattggactgcatcaacgcgataacgatcgactg
attggcacgctcaagcatttacgtgacttgggcaatagtgttttagttgtagagcatgat
gaagacatgatccgtgcatcagattgggtaatcgatatcgggcctggtgccggcgttcat
ggcggcgaaattgttgcgcaaggtacacctgcggaagttgaggccgatattaaatctctc
actggcgcttaccttgctggacgtgaatcaattgaagttccagaaaagcgcattcctgta
aatgatcgcttcttagaaattatcggtgcacgcggaaacaacttgcaatccgtacatgcc
aagattcccgtaggactactaacttgcgtgactggtgtctcaggttcaggtaaatcaacc
ctaatcaatgacacccttcatcatgcagtcgctcaacatttgtatggttcaagtgctgag
ccagctgcgcacgatgccatcaagggcctagagcacttcgacaaagtcattagcgtggat
cagtcaccgattggtcgtacaccacgatccaaccctgctacctataccggtcttttcaca
cccattcgtgagctatttgcaggagttcccgctgcgcgtgaacgtggttacgaagctggc
cgcttctcctttaacgtcaaaggcggtcgttgtgatgcctgtgaaggtgatggcgttctc
aaagtcgaaatgcatttcttgccagatgtttatgtgccttgtgatgtttgtcatggcaag
cgctataaccgcgaaacattagacatccgttacaaagggaaaaatattcacgaagtgctt
tcaatgacgatcgaacaagctcatgaattctttgaagcagttcctgtggttaaacgcaaa
ctcaaaacacttttggacgttggtttaggttacgtacagctaggccaaagcgcaacgact
ctgtcaggcggtgaagcgcaacgcgtaaagctttcgctagagctttccaaacgcgatacc
ggaagaacgctctatatcttggatgagcccactacgggcttgcatttccacgatattcaa
ctgctattaaccgtcattcaaacgctgaagaaacaaggcaatacgatcgtcatcatcgaa
cacaatctcgatgtaattaagactgccgattggattattgatttaggccctaaaggtggt
gctggtggtggacaaatcattgcgactggaacgcccgaagaagttgccaagaatgatgtg
agttttaccggtcattatctggcccccctcttaactcgcaaaatgagtacgagtgcaggc
gcagccaaaaagaaaaagtag
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