Pyrenophora tritici-repentis: 6338346
Help
Entry
6338346 CDS
T10215
Symbol
PtrM4_026000
Name
(RefSeq) YSH1, exonuclease beta-lactamase fold involved in RNA processing
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6338346 (PtrM4_026000)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6338346 (PtrM4_026000)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
6338346 (PtrM4_026000)
U7-dependent histone pre-mRNA processing factors
6338346 (PtrM4_026000)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
6338346
NCBI-ProteinID:
XP_001932390
UniProt:
B2VU84
LinkDB
All DBs
Position
1:6672292..6675266
Genome browser
AA seq
954 aa
AA seq
DB search
MFNFTPLLGAQSSSPASQSLLEFDGGIQILIDVGWDEQFNVEKLKEIERHVPTISFILLT
HATTAHLGAYVHCCKNFPLFTRIPVYATNPVISLGRTLLQDLYESTPLASSIIPTEALNE
SAYSFSSALKGGNNPNILLQAPTSQEIADYFARINPLRYSQPHEPIPSPHSPPLNGLTIT
AYSAGHTLGGSIWHIQHGMESVVYAVDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRHPT
ALICSTKNTGMVKKARSPNERDEALLEMIRNTISNGGTVLIPSDSSARILELAYLLEDTW
EREVTEGDGSGPLSTTKLYLASRTGGATMRYVRSMLEWMEEGIVKEFEASAADQDRRTKE
GQEEERVAKVPFDFRHITLLERKTRVARMLAGAGPRVILASDATLEWGFSKDAIRSLASD
EKNLVILTERSGELGSQKKGLGRYLWDLWNQRNASPGEDAPSTTVIDASGNQAPLDTVRT
VALQGDEVPLYQQFLASQRQRQTTMGGDNAAMLETSADVVDDRSSTESESSEGSGDGYRG
KALNATVALQHARNKLGMTDAELGVNVLIRRKNVYDYEVQGKKGKERMFPFQAKKRRTDD
FGDLIRPEDFARAEERDNAAGEALRGDGTKKENAVGLKRRWDDLVNTADNTKATANQKRR
KDHEGGEGEESESDSEPEDGPDKVEGPAKVIIESSTLEIRCRIAFVDFSGLHDRRTIQSL
IPLIRPRKLIFIGGEASETLELAEISRLALNANNDSANAIDIFTPTIGTLVDASVDTNAW
TVKLSRNMVRNLRWQNVRGMGVVAITGRLAAARLEPHSSSTTTEEADTPAKKKARLDAPA
IPVSSDKNDNTPVLDVVPTNMATAVRSVAQPFHVGDLRLADLRRLMTANGMQAEYRGDGI
LVINGSVAVRKTATGQIEIDGGAYGNLDPRNNDAATFLRVRRQIYEGLAVVAGG
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacttcacacctcttctgggcgcgcagagctcctcgcccgcgtcgcagtcacta
ttggagttcgatggtggcatacagatcctcatagatgtcgggtgggatgagcagttcaac
gtagagaaactaaaggagattgagagacatgtccccaccatctccttcatcctgctcacc
cacgcaacaactgcgcatctcggcgcctacgtccactgctgcaagaactttcctttattc
acgcgaatacccgtatacgctacaaaccccgtcatatcgctcggccgaacgctcctacag
gacctctacgaatccacgcctcttgcatcttcgataataccaactgaagctctcaatgag
tctgcatactcattctcttcagctctcaaaggtgggaataacccaaacattcttctgcag
gcgccgacatcgcaagagatcgccgactacttcgcccgtataaaccctctgcggtactca
caaccacacgagcctattccatcgccacactcgcctcctctcaacggccttaccattact
gcatacagtgctggacatacattggggggctcaatatggcatatacaacatggcatggag
tcggtcgtctacgccgtcgactggaaccaagctagagagcatgtcctttctggtgctgct
tggcttggaggtcctggtaccggtggctcggaggttctggaacagttgcgccacccaact
gccttgatctgcagtactaaaaacacaggtatggtcaagaaagctaggtcgcccaacgag
cgagacgaggctcttcttgagatgatacgaaatacgatcagcaatggaggaactgttttg
attccttcggactcaagtgcccgtatcttggaattggcataccttctcgaagatacttgg
gagcgcgaagtaactgaaggggatggtagcggtccactgagtaccacaaaactttacctt
gctagtcggacaggaggagcgacaatgcgatatgtacgaagtatgttggagtggatggag
gagggcatcgtgaaagagttcgaggccagtgcagccgaccaggaccgacgaaccaaagaa
gggcaagaggaggagcgagtagccaaggtcccgttcgatttccgacacataacacttctg
gagcgcaagacacgagtagctcgtatgcttgcgggtgctggaccgcgtgtgatccttgca
agcgacgcaacacttgagtggggtttctcaaaggatgctatccgaagcttagcatctgac
gagaagaacctggttatccttacagagcgatcaggcgaactgggctctcagaagaaggga
cttggcaggtatctttgggatctatggaatcagcgcaatgcatcgccgggagaagacgcg
ccttctactaccgtgattgatgcgtctggcaaccaggctccgttagacacggtacgaact
gtcgcccttcaaggtgatgaggtcccactctaccagcaatttctcgcaagtcagaggcaa
cggcagactaccatgggcggtgacaatgcagcaatgcttgaaacctctgcggatgttgtt
gacgaccggtcgtctaccgaatcagagagttcggagggttcaggggacggatatcgaggc
aaagctttgaacgcaactgttgccctccaacatgcccgcaataagcttggtatgacggat
gcagagctgggcgtcaatgtgctcattcgccgcaaaaatgtttacgactacgaagtacag
gggaagaagggcaaggagaggatgttcccattccaggcgaagaagcgccgtacagatgac
tttggtgatcttattcgcccagaagactttgcgcgcgctgaggaacgggacaatgcagca
ggtgaggctcttcgtggtgatggcactaagaaggagaatgccgtcggtctcaagagaaga
tgggacgacctcgtcaacactgccgacaacaccaaggcgactgccaaccaaaaaaggcga
aaagaccacgaagggggagaaggcgaggagagtgagtcagacagcgaaccggaagacggc
ccagacaaggtcgaaggcccagccaaagtcatcatcgaatcttcaaccctggaaatccgg
tgccgaatcgcttttgtcgacttctccggcctccacgaccgccgcaccattcaatcacta
atcccactcatccgtccacgcaagctcatcttcatcggcggcgaagccagcgaaacactc
gagctggcagaaatcagccgtctagcactcaacgcaaacaacgactcggccaacgccatc
gacatcttcacacccaccatcggcacccttgtagacgccagcgtcgacacaaacgcctgg
accgtcaagctcagccgcaacatggtccgcaacctccgctggcaaaacgtccgtggcatg
ggcgttgtagccatcaccggccgtcttgcagccgcaagactagaaccccactcctcctcc
accaccacggaagaggctgacacgcccgcgaaaaagaaggctagactagacgctccggcc
atacccgtctccagcgataaaaacgacaacacccctgttttggatgtcgtgcctactaat
atggctacggcggtacgatcagtggctcagccgtttcacgttggtgatctcaggcttgca
gatttgagacgcctgatgacggcgaatggaatgcaagcggagtatcggggtgatggtatt
ctagttatcaatggcagtgttgccgtacgcaagacagcgacgggccagattgagattgat
ggtggggcgtatggaaacttggatccgaggaataatgatgctgctacttttttgagggtc
aggagacagatttatgagggcttggctgtggtggctgggggttag
DBGET
integrated database retrieval system
